View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_40 (Length: 255)
Name: NF12740_low_40
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 28663673 - 28663913
Alignment:
| Q |
1 |
caaaaatgatttctctatacattaccnnnnnnntgtttccatcagaataaattaatttaagaacttagcctaatggaaaaaacatatatacacaaataag |
100 |
Q |
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| T |
28663673 |
caaaaatgatttctctatacattaccaaaaaaatgtttccatcagaataaattaatttaagaacttagcctaatggaaaatacatatatacacatataaa |
28663772 |
T |
|
| Q |
101 |
tataagtgaaggataatgtaaaataaaagagttacaaatcaaaatagttaaagaaaatctctataatgaagaacataaattatcatattacttagagagt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28663773 |
tataagtgaagaataatgtaaaataaaagagttacaaatcaaaatagttaaagaaaatctctataatgaagaacataaattatcatattacttagagagt |
28663872 |
T |
|
| Q |
201 |
agttatatcgaaacttaggtgcaaattttgaagtagttttt |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
28663873 |
agttatatcgaaacttaggtgcaaattttgaagtagttttt |
28663913 |
T |
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