View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_41 (Length: 246)
Name: NF12740_low_41
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 4246563 - 4246796
Alignment:
| Q |
1 |
cccaaatggaaataactcaatcaagatcttatccaagaagtacccaggtcaaaaaggaaatgaaagaagcttaaagaatttccattttgaaccaaaactc |
100 |
Q |
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| T |
4246563 |
cccaaatggaaataactcaatcaagatcttatccaagaagtacccaagtcaaaaaagaaatgaaagaagcttaaagaatttccattttgaaccaaaactc |
4246662 |
T |
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| Q |
101 |
aaagactgtgttcgcgctacttttgaactcaagcacgaagatttggataagataaagcaaagggtgttatcatcatgggaaacattcgatacaagaaaat |
200 |
Q |
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| T |
4246663 |
aaagactgtgttcgcgctacttttgaactcaaacacgaagatttggataagataaagcaaagggtgttatcaacatgggaaacattcgatacaagagaat |
4246762 |
T |
|
| Q |
201 |
caaagccacaaaatatatcatcgtttgtcctcgc |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4246763 |
caaagccacaaaatatatcatcgtttgtcctcgc |
4246796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 4251048 - 4251226
Alignment:
| Q |
51 |
aaaaaggaaatgaaagaagcttaaagaatttccattttgaaccaaaactcaaagactgtgttcgcgctacttttgaactcaagcacgaagatttggataa |
150 |
Q |
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||||||||||||| ||||||||||||| ||||| ||||||||| ||||| |||||| |||||| ||||||||| | ||||| || |||||||||||||| |
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| T |
4251048 |
aaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaactcgaagactctgttcgtgctacttttaagctcaaacatgaagatttggataa |
4251147 |
T |
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| Q |
151 |
gataaagcaaagggtgttatcatcatgggaaacattcgatacaagaaaatcaaagccacaaaatatatcatcgtttgtc |
229 |
Q |
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| T |
4251148 |
gataaagcaaagagtgttatctacatgggaaatattcgatacgaaagaatcaaagccacaaactctatcatcatttgtc |
4251226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 4234032 - 4234162
Alignment:
| Q |
51 |
aaaaaggaaatgaaagaagcttaaagaatttccattttgaaccaaaactcaaagactgtgttcgcgctacttttgaactcaagcacgaagatttggataa |
150 |
Q |
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|||||||||||||||||||||| |||| ||| | |||||||||||||||| |||||| |||||| |||| || | |||| | ||||||||| |||| |
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| T |
4234032 |
aaaaaggaaatgaaagaagcttgaagattttaccttttgaaccaaaactcgaagactatgttcgttctacattcaagctcacacgtgaagatttgaataa |
4234131 |
T |
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| Q |
151 |
gataaagcaaagggtgttatcatcatgggaa |
181 |
Q |
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||||||||||| ||| |||||| ||||||| |
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| T |
4234132 |
gataaagcaaatggtattatcaaaatgggaa |
4234162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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