View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_low_49 (Length: 239)

Name: NF12740_low_49
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_low_49
NF12740_low_49
[»] chr7 (8 HSPs)
chr7 (96-223)||(4241511-4241638)
chr7 (20-223)||(4195977-4196180)
chr7 (1-222)||(4233724-4233945)
chr7 (22-223)||(4189085-4189289)
chr7 (22-223)||(4192225-4192429)
chr7 (21-223)||(4250754-4250956)
chr7 (1-102)||(4246440-4246541)
chr7 (77-205)||(4095159-4095287)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 4241638 - 4241511
Alignment:
Q  96 agattttccatcaagaacagcatgatcagtgcttattccaatggaaaaaccacgttttggaaaaagagttatttggagtgagataatagaagcagaagaa 195  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4241638 agattttccatcaagaacagcatgatgagtgcttattccaatggaaaaaccacgttttggaaaaagagttatttggagtgagataatagaagcaaaagaa 4241539  T
Q  196 tttgttgatttcaaatgtggtataaaag 223  Q
    ||||||||||||||||||||||||||||    
T  4241538 tttgttgatttcaaatgtggtataaaag 4241511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 4196180 - 4195977
Alignment:
Q  20 gcaacagagttggtgattcttcggtttcaaatgttttgttgcatagataagcccaaactttgatgaaaatgattgaagattttccatcaagaacagcatg 119  Q
    |||||| |||||||| ||||||||||||||  |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||| ||||||    
T  4196180 gcaacaaagttggtggttcttcggtttcaatggttttgttgcatagataagcccaagctttgatgaacatgattgaggattttccatctagaatagcatg 4196081  T
Q  120 atcagtgcttattccaatggaaaaaccacgttttggaaaaagagttatttggagtgagataatagaagcagaagaatttgttgatttcaaatgtggtata 219  Q
     | |||||||||||||||||||||||||| ||  |||||||  ||||| || | |||||||||||||||| ||||||  ||||||| |||||||||||||    
T  4196080 gtgagtgcttattccaatggaaaaaccactttccggaaaaaaggttatctgaattgagataatagaagcaaaagaatcagttgattccaaatgtggtata 4195981  T
Q  220 aaag 223  Q
    ||||    
T  4195980 aaag 4195977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4233945 - 4233724
Alignment:
Q  1 aataaaggctttaaatcttgcaacagagttggtgattcttcggtttcaaatgttttgttgcatagataagcccaaactttgatgaaaatgattgaagatt 100  Q
    |||| ||| ||||| ||| |||||| ||||||   |||||| |||||||  ||||||||||||||||| |||||| |||||||||| ||| |||| ||||    
T  4233945 aatagaggttttaactctggcaacaaagttggcagttcttctgtttcaatagttttgttgcatagatatgcccaagctttgatgaacatggttgaggatt 4233846  T
Q  101 ttccatcaagaacagcatgatcagtgcttattccaatggaaaaaccacgttttggaaaaagagttatttggagtgagataatagaagcagaagaatttgt 200  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||| ||||| || | |||||||||||||||| ||||||||||    
T  4233845 ttccatcaagagcagcatgatgagtgcttattccaatggaaaaaccactttctggaaaaagggttatctgaactgagataatagaagcaaaagaatttgt 4233746  T
Q  201 tgatttcaaatgtggtataaaa 222  Q
     ||||  |||||||||| ||||    
T  4233745 cgattctaaatgtggtacaaaa 4233724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 4189289 - 4189085
Alignment:
Q  22 aacagagttggtgattcttc---ggtttcaaatgttttgttgcatagataagcccaaactttgatgaaaatgattgaagattttccatcaagaacagcat 118  Q
    |||| |||||||||||||||   |||||||| | |||||| |||||||||||||||| |||| ||||| ||| |||| ||||||||||||||| ||||||    
T  4189289 aacaaagttggtgattcttctttggtttcaattattttgtggcatagataagcccaagctttcatgaacatggttgatgattttccatcaagaccagcat 4189190  T
Q  119 gatcagtgcttattccaatggaaaaaccacgttttggaaaaagagttatttggagtgagataatagaagcagaagaatttgttgatttcaaatgtggtat 218  Q
    | |  ||||||||||||||||||||||||| |||||||||||| ||||| || | ||| |||||||||||||| |||| |||||||| |||||||||||     
T  4189189 ggtgtgtgcttattccaatggaaaaaccactttttggaaaaagggttatctgaattgaaataatagaagcagatgaatctgttgattccaaatgtggtag 4189090  T
Q  219 aaaag 223  Q
    |||||    
T  4189089 aaaag 4189085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 4192429 - 4192225
Alignment:
Q  22 aacagagttggtgattcttc---ggtttcaaatgttttgttgcatagataagcccaaactttgatgaaaatgattgaagattttccatcaagaacagcat 118  Q
    |||| |||||||||||||||   |||||||| |||||||||||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||| |||    
T  4192429 aacaaagttggtgattcttcattggtttcaattgttttgttgcataaataagcccaagctttgatgaacatggttgaagattttccatcaagaacaccat 4192330  T
Q  119 gatcagtgcttattccaatggaaaaaccacgttttggaaaaagagttatttggagtgagataatagaagcagaagaatttgttgatttcaaatgtggtat 218  Q
    | |  |||||  ||| |||||||||||||| |||| ||||||| ||||| || | ||| |||||||||||| |||||| ||  |||| |||||| |||||    
T  4192329 ggtgtgtgctagttctaatggaaaaaccacttttttgaaaaagggttatctgaactgaaataatagaagcaaaagaatctgcggattccaaatgcggtat 4192230  T
Q  219 aaaag 223  Q
    |||||    
T  4192229 aaaag 4192225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 4250956 - 4250754
Alignment:
Q  21 caacagagttggtgattcttcggtttcaaatgttttgttgcatagataagcccaaactttgatgaaaatgattgaagattttccatcaagaacagcatga 120  Q
    ||||| |||||||||||| ||  ||||||  | ||| |||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||    
T  4250956 caacaaagttggtgattcatctctttcaatagcttttttgcatagataagcccaagctttgacgaacatggttgaagattttccatcaagaacagcatga 4250857  T
Q  121 tcagtgcttattccaatggaaaaaccacgttttggaaaaagagttatttggagtgagataatagaagcagaagaatttgttgatttcaaatgtggtataa 220  Q
    | |||||| ||||| |||  ||||||||  ||||| ||||| || ||||||||||| |||||||||||| |||||| || |||||  || || |||||||    
T  4250856 tgagtgctgattccgatgctaaaaccactatttgggaaaagggtgatttggagtgacataatagaagcaaaagaatctgatgattctaagtggggtataa 4250757  T
Q  221 aag 223  Q
    |||    
T  4250756 aag 4250754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 4246541 - 4246440
Alignment:
Q  1 aataaaggctttaaatcttgcaacagagttggtgattcttcggtttcaaatgttttgttgcatagataagcccaaactttgatgaaaatgattgaagatt 100  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  4246541 aatataggttttaactcttgcaacagagttggtgattcttcggtttcaaatgttttgttgcatagataagcccaagctttgatgaagatgattgaagatt 4246442  T
Q  101 tt 102  Q
    ||    
T  4246441 tt 4246440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 4095287 - 4095159
Alignment:
Q  77 ctttgatgaaaatgattgaagattttccatcaagaacagcatgatcagtgcttattccaatggaaaaaccacgttttggaaaaagagttatttggagtga 176  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||||||  ||| |||||||| ||||| || | |||    
T  4095287 ctttgatgaacatggttgaagattttccatcaagaacagcatggtgtgtgcttattccaatggaaaaaccatttttcggaaaaagggttatctgaattga 4095188  T
Q  177 gataatagaagcagaagaatttgttgatt 205  Q
     |||||||||||| |||||| || |||||    
T  4095187 aataatagaagcaaaagaatctgatgatt 4095159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University