View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_low_56 (Length: 215)

Name: NF12740_low_56
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_low_56
NF12740_low_56
[»] chr1 (36 HSPs)
chr1 (14-206)||(27476765-27476957)
chr1 (29-76)||(45235388-45235435)
chr1 (18-76)||(24047100-24047158)
chr1 (16-76)||(12370184-12370243)
chr1 (16-72)||(18037609-18037665)
chr1 (14-73)||(21267987-21268046)
chr1 (18-75)||(17410252-17410309)
chr1 (14-75)||(17745250-17745311)
chr1 (14-75)||(21547474-21547535)
chr1 (14-75)||(31794258-31794319)
chr1 (26-75)||(40257420-40257469)
chr1 (15-75)||(6122815-6122875)
chr1 (39-75)||(52116800-52116836)
chr1 (16-55)||(17439958-17439997)
chr1 (16-71)||(18459227-18459282)
chr1 (16-71)||(50901607-50901662)
chr1 (14-72)||(3265948-3266006)
chr1 (18-76)||(4824991-4825049)
chr1 (14-72)||(31049637-31049695)
chr1 (17-75)||(31383795-31383853)
chr1 (18-76)||(31605846-31605904)
chr1 (14-75)||(8177176-8177237)
chr1 (14-75)||(9165189-9165250)
chr1 (14-75)||(10526844-10526905)
chr1 (18-67)||(17297013-17297062)
chr1 (18-75)||(19528325-19528382)
chr1 (14-75)||(33700767-33700828)
chr1 (22-75)||(36124854-36124907)
chr1 (14-75)||(36371491-36371552)
chr1 (16-57)||(42949288-42949329)
chr1 (14-75)||(52336768-52336829)
chr1 (14-54)||(8904456-8904496)
chr1 (18-66)||(12259290-12259338)
chr1 (17-73)||(15786317-15786373)
chr1 (15-75)||(44126416-44126476)
chr1 (37-73)||(50380826-50380862)
[»] chr7 (25 HSPs)
chr7 (16-76)||(2446328-2446388)
chr7 (17-75)||(23301599-23301657)
chr7 (18-74)||(20335829-20335885)
chr7 (17-76)||(29385740-29385799)
chr7 (14-75)||(26459404-26459465)
chr7 (15-75)||(43215205-43215265)
chr7 (16-77)||(5668567-5668628)
chr7 (14-75)||(15137574-15137635)
chr7 (15-72)||(23552142-23552199)
chr7 (14-75)||(41519258-41519319)
chr7 (18-75)||(43590928-43590985)
chr7 (15-75)||(18363717-18363777)
chr7 (16-76)||(43663091-43663151)
chr7 (16-55)||(7309397-7309436)
chr7 (16-75)||(35513487-35513546)
chr7 (26-76)||(28236587-28236637)
chr7 (14-75)||(2962480-2962541)
chr7 (18-75)||(5579232-5579289)
chr7 (14-75)||(7721390-7721451)
chr7 (18-75)||(22760884-22760941)
chr7 (18-75)||(37085547-37085604)
chr7 (39-75)||(25021354-25021390)
chr7 (15-75)||(33181205-33181265)
chr7 (15-75)||(39631865-39631925)
chr7 (39-75)||(48984148-48984184)
[»] chr5 (17 HSPs)
chr5 (16-76)||(8278271-8278331)
chr5 (14-75)||(29075802-29075863)
chr5 (14-75)||(16773828-16773889)
chr5 (14-75)||(25627078-25627139)
chr5 (15-73)||(17028259-17028317)
chr5 (26-75)||(30883204-30883253)
chr5 (16-75)||(14495801-14495860)
chr5 (14-61)||(29210393-29210440)
chr5 (21-75)||(16436639-16436692)
chr5 (14-68)||(31074260-31074314)
chr5 (31-72)||(9842857-9842898)
chr5 (14-71)||(14285186-14285243)
chr5 (30-75)||(16457831-16457876)
chr5 (14-75)||(34984827-34984888)
chr5 (14-75)||(37258360-37258421)
chr5 (15-75)||(21549132-21549192)
chr5 (39-75)||(35796638-35796674)
[»] chr2 (32 HSPs)
chr2 (18-76)||(19016051-19016109)
chr2 (16-75)||(7799031-7799090)
chr2 (14-75)||(11251108-11251169)
chr2 (14-75)||(1729837-1729898)
chr2 (14-66)||(45026773-45026825)
chr2 (14-72)||(13803519-13803577)
chr2 (17-75)||(42327392-42327450)
chr2 (31-72)||(7667480-7667521)
chr2 (15-72)||(11062384-11062441)
chr2 (18-75)||(23052521-23052578)
chr2 (14-75)||(30410543-30410604)
chr2 (18-75)||(39715013-39715070)
chr2 (18-70)||(21939121-21939173)
chr2 (16-75)||(42602575-42602634)
chr2 (17-71)||(7599978-7600032)
chr2 (21-75)||(18825362-18825415)
chr2 (30-76)||(24191858-24191904)
chr2 (17-75)||(26545861-26545919)
chr2 (14-75)||(1435085-1435145)
chr2 (14-75)||(3001400-3001461)
chr2 (18-75)||(21213790-21213847)
chr2 (18-75)||(29503292-29503349)
chr2 (14-71)||(33569852-33569909)
chr2 (18-75)||(37480096-37480153)
chr2 (26-75)||(37755977-37756026)
chr2 (16-72)||(4262298-4262354)
chr2 (18-70)||(12517751-12517803)
chr2 (15-75)||(19322789-19322849)
chr2 (15-75)||(21195671-21195731)
chr2 (19-75)||(29197375-29197431)
chr2 (31-75)||(41504947-41504991)
chr2 (20-72)||(42860372-42860424)
[»] chr6 (14 HSPs)
chr6 (17-74)||(13113958-13114015)
chr6 (16-75)||(33549125-33549184)
chr6 (14-75)||(6776601-6776662)
chr6 (18-75)||(21418491-21418548)
chr6 (15-75)||(12188298-12188358)
chr6 (15-75)||(20863396-20863456)
chr6 (23-75)||(31622994-31623046)
chr6 (20-75)||(10338174-10338229)
chr6 (14-75)||(6758416-6758477)
chr6 (16-69)||(19162810-19162863)
chr6 (16-72)||(12633033-12633089)
chr6 (22-73)||(13661543-13661594)
chr6 (16-75)||(28841435-28841494)
chr6 (16-73)||(34786450-34786507)
[»] chr3 (17 HSPs)
chr3 (14-75)||(27093355-27093416)
chr3 (14-72)||(27259185-27259243)
chr3 (14-71)||(10445133-10445190)
chr3 (15-75)||(32651433-32651493)
chr3 (14-75)||(46518649-46518710)
chr3 (15-75)||(30510194-30510254)
chr3 (15-75)||(36720402-36720462)
chr3 (15-75)||(37788460-37788520)
chr3 (16-75)||(21960572-21960631)
chr3 (16-71)||(31520601-31520656)
chr3 (16-75)||(51903874-51903933)
chr3 (17-75)||(2597217-2597275)
chr3 (18-75)||(14339631-14339688)
chr3 (14-55)||(31608518-31608559)
chr3 (18-75)||(47454615-47454672)
chr3 (15-75)||(2667883-2667943)
chr3 (39-75)||(8075146-8075182)
[»] scaffold0258 (1 HSPs)
scaffold0258 (16-75)||(15319-15378)
[»] chr8 (18 HSPs)
chr8 (16-75)||(968383-968442)
chr8 (14-75)||(6536541-6536602)
chr8 (18-75)||(16852361-16852418)
chr8 (15-71)||(44780109-44780165)
chr8 (21-76)||(34966851-34966906)
chr8 (41-75)||(6436576-6436610)
chr8 (17-74)||(29431033-29431090)
chr8 (15-75)||(11819797-11819857)
chr8 (15-75)||(27750751-27750811)
chr8 (16-75)||(3624601-3624660)
chr8 (20-75)||(29858049-29858104)
chr8 (41-76)||(43969019-43969054)
chr8 (37-75)||(15948066-15948104)
chr8 (30-75)||(2203513-2203558)
chr8 (16-81)||(16843790-16843855)
chr8 (14-75)||(18540319-18540380)
chr8 (18-75)||(19703485-19703542)
chr8 (18-75)||(28783081-28783138)
[»] chr4 (29 HSPs)
chr4 (16-75)||(13015448-13015507)
chr4 (14-75)||(4249198-4249259)
chr4 (18-75)||(19238575-19238632)
chr4 (14-75)||(37109345-37109406)
chr4 (14-74)||(7949448-7949508)
chr4 (15-75)||(8030199-8030259)
chr4 (16-75)||(24234666-24234725)
chr4 (16-75)||(49576890-49576949)
chr4 (18-75)||(4185114-4185171)
chr4 (15-72)||(23377980-23378037)
chr4 (30-75)||(31759668-31759713)
chr4 (18-70)||(32992638-32992690)
chr4 (20-75)||(51250522-51250577)
chr4 (16-71)||(51954139-51954194)
chr4 (18-76)||(39509090-39509148)
chr4 (14-71)||(2622389-2622446)
chr4 (30-75)||(17618302-17618347)
chr4 (18-75)||(19229206-19229262)
chr4 (14-75)||(19531996-19532057)
chr4 (14-75)||(19680782-19680843)
chr4 (18-75)||(30938217-30938274)
chr4 (14-71)||(37274453-37274510)
chr4 (14-75)||(38869789-38869850)
chr4 (19-76)||(40283985-40284042)
chr4 (18-75)||(55427198-55427255)
chr4 (43-75)||(4911255-4911287)
chr4 (15-75)||(7292793-7292853)
chr4 (18-70)||(46295123-46295175)
chr4 (14-74)||(53496899-53496959)
[»] scaffold0299 (1 HSPs)
scaffold0299 (14-75)||(11549-11610)
[»] scaffold0172 (1 HSPs)
scaffold0172 (18-75)||(15775-15832)
[»] scaffold0211 (1 HSPs)
scaffold0211 (37-76)||(24073-24112)
[»] scaffold0074 (1 HSPs)
scaffold0074 (14-73)||(45753-45812)
[»] scaffold0368 (1 HSPs)
scaffold0368 (16-57)||(14961-15002)
[»] scaffold0180 (1 HSPs)
scaffold0180 (14-75)||(19956-20017)
[»] scaffold0126 (1 HSPs)
scaffold0126 (14-75)||(25341-25402)
[»] scaffold0009 (1 HSPs)
scaffold0009 (19-76)||(19846-19903)
[»] scaffold1367 (1 HSPs)
scaffold1367 (15-75)||(835-895)
[»] scaffold0122 (1 HSPs)
scaffold0122 (39-75)||(6938-6974)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 27476765 - 27476957
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccataaataaaaatagatatgtattgtatattattaaattt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27476765 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccataaataaaaatagatatgtattgtatattattaaattt 27476864  T
Q  114 gtacatttgaggtaatgcagcagaattctcattacannnnnnnatactgtatacaatgaacatgtaaaaagatttaaggactgatgtccatct 206  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27476865 gtacatttgaggtaatgcagcagaattctcattacatttttttatactgtatacaatgaacatgtaaaaaaatttaaggactgatgtccatct 27476957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 45235388 - 45235435
Alignment:
Q  29 ttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  45235388 ttgagatctcgaggaggagcacactcccaagtcccaaaccaataccat 45235435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 24047100 - 24047158
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    ||||||| ||||||| | |||||||||||||||||||| ||||| ||||||||||||||    
T  24047100 gagaatcgaacttgaaacctcgaggaggagcacactcccaagtctcaagccaataccat 24047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 12370243 - 12370184
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    ||||||||||||| ||||| |||||||||||||||||||| | |||||||| |||||||||    
T  12370243 gagagaatcaaacatgagacctcgaggaggagcacactcccaggtcccaag-caataccat 12370184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 18037609 - 18037665
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    ||||||||| |||||||||||||||  ||||||||||||| ||||||||| ||||||    
T  18037609 gagagaatcgaacttgagatctcgaaaaggagcacactcccaagtcccaaaccaata 18037665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 21267987 - 21268046
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatac 73  Q
    |||||||||||||||   ||| || ||||||||||||||||| |||||||||||||||||    
T  21267987 cagagagaatcaaacccaagacctagaggaggagcacactcccaagtcccaagccaatac 21268046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 17410309 - 17410252
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||||||||||||||||||||| |||||||| |  |||||| |||||||||    
T  17410309 gagaatcgaacttgagatctcgaggaggaccacactcccagatcccaaaccaatacca 17410252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 17745250 - 17745311
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| ||||||||||||||||| |  | |||||||||||||||||    
T  17745250 cagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaatacca 17745311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 21547474 - 21547535
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||| | ||||||||||||||| |||| | |||||||||||||||||    
T  21547474 cagagagaatcgaacctgaaacctcgaggaggagcaccctcccatgtcccaagccaatacca 21547535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 31794258 - 31794319
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| ||||| ||||  ||| || ||||||||||||||||| |||||||||||||||||||    
T  31794258 cagagggaatcgaactctagaccttgaggaggagcacactcccaagtcccaagccaatacca 31794319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 40257469 - 40257420
Alignment:
Q  26 aacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| |||||||||||||||||||| | ||| |||||||||||||    
T  40257469 aacttgagacctcgaggaggagcacactcccaggtctcaagccaatacca 40257420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 6122875 - 6122815
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||| ||||| ||| ||||| || ||||||||||||||||| |||||||||||| ||||||    
T  6122875 agagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctatacca 6122815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 52116800 - 52116836
Alignment:
Q  39 gaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||||| |||||||||||||||||||    
T  52116800 gaggaggagcacactcccaagtcccaagccaatacca 52116836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 17439997 - 17439958
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcc 55  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  17439997 gagagaatcaaacatgagacctcgaggaggagcacactcc 17439958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 18459227 - 18459282
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    ||||||||||||  | ||| ||| |||||||||||||||| |||||||||||||||    
T  18459227 gagagaatcaaatctaagacctcaaggaggagcacactcccaagtcccaagccaat 18459282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 50901662 - 50901607
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    ||||||||| || |||||| |||||||||||||||||| | | |||||||||||||    
T  50901662 gagagaatcgaatttgagacctcgaggaggagcacactaccaggtcccaagccaat 50901607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 3266006 - 3265948
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    ||||||||||| ||| ||||| || ||||||||||||||||| |||| ||||| |||||    
T  3266006 cagagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagtcaata 3265948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 4825049 - 4824991
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    ||||||||||| ||||| || || |||||||||||||| | |||||||||||| |||||    
T  4825049 gagaatcaaacctgagaccttgaagaggagcacactccaaggtcccaagccaacaccat 4824991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 31049695 - 31049637
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    ||||||||||| ||  ||||||||  ||||||||||||||||||  |||||||||||||    
T  31049695 cagagagaatcgaagatgagatctttaggaggagcacactcctagatcccaagccaata 31049637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 31383795 - 31383853
Alignment:
Q  17 agagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||| ||| ||||| | | |||||||||||||||| | |||||||||||||||||    
T  31383795 agagaatcgaacctgagaccccaaggaggagcacactcccaggtcccaagccaatacca 31383853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 31605846 - 31605904
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    ||||||| ||||||||| || ||||||||||||||| | | |||||||||||| |||||    
T  31605846 gagaatcgaacttgagaccttgaggaggagcacacttcaaggtcccaagccaacaccat 31605904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 8177176 - 8177237
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||| | || ||||||||||||||||| |  ||||||||||||||||    
T  8177176 cagagagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaatacca 8177237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 9165189 - 9165250
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||  ||| |||||  | ||||||||||||||||| | |||||||||||||||||    
T  9165189 cagagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaatacca 9165250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 10526905 - 10526844
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||  ||||| || ||||||||||| ||||| | |||||||||||||||||    
T  10526905 cagagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaatacca 10526844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 17297062 - 17297013
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagc 67  Q
    ||||||||||| ||||| || ||||||||||||||||| | |||||||||    
T  17297062 gagaatcaaacatgagaccttgaggaggagcacactccaaggtcccaagc 17297013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 19528325 - 19528382
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| || |||||||||||||||| ||  ||||||||||||||||    
T  19528325 gagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaatacca 19528382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 33700767 - 33700828
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| || ||||||||||||||||| |  | ||||||||||||||    
T  33700767 cagagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaatacca 33700828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 36124907 - 36124854
Alignment:
Q  22 atcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||| ||| |||||||||||||||  | |||||||| ||||||||    
T  36124907 atcaaacttgagacctcaaggaggagcacactctcaggtcccaagtcaatacca 36124854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 36371552 - 36371491
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| | ||| || ||||||||||||||||| | || ||||||||||||||    
T  36371552 cagagagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaatacca 36371491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 42949288 - 42949329
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactccta 57  Q
    ||||||||||||  ||||| ||||||||||||||||||||||    
T  42949288 gagagaatcaaatatgagacctcgaggaggagcacactccta 42949329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 52336768 - 52336829
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||| |||| ||| ||||||||  |||||||||||||||| |  ||||||||||||||||    
T  52336768 cagagataatcgaacctgagatcttaaggaggagcacactcccagatcccaagccaatacca 52336829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 8904496 - 8904456
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactc 54  Q
    ||||||||||| ||||||||| || ||||||||||||||||    
T  8904496 cagagagaatcgaacttgagaccttgaggaggagcacactc 8904456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 12259338 - 12259290
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaag 66  Q
    ||||||| |||||||||  ||||||||||||||||||| || |||||||    
T  12259338 gagaatcgaacttgagacttcgaggaggagcacactcccaaatcccaag 12259290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 15786317 - 15786373
Alignment:
Q  17 agagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatac 73  Q
    |||||||| ||| ||||| || ||||||||||||||||| |  ||||||||||||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 15786373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 44126476 - 44126416
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||||||  ||||| |||| ||||||||||||||| | |||||| | ||||||||    
T  44126476 agagagaatcaaatctgagacctcgtggaggagcacactcccaggtcccaggtcaatacca 44126416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 50380826 - 50380862
Alignment:
Q  37 tcgaggaggagcacactcctaagtcccaagccaatac 73  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  50380826 tcgaggaggagcacactcccaagtctcaagccaatac 50380862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 2446388 - 2446328
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2446388 gagagaatcgaacttgagatctcgaggaggagcacactcccaagtcccaagccaataccat 2446328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 23301599 - 23301657
Alignment:
Q  17 agagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||    
T  23301599 agagaatcaaacttgagacctcaaggaggagcacactcccaagtcccaagtcaatacca 23301657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 20335829 - 20335885
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacc 74  Q
    ||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  20335829 gagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacc 20335885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 29385740 - 29385799
Alignment:
Q  17 agagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    |||||||||||| ||||| || ||||||||||||||||| |||||||||||||| |||||    
T  29385740 agagaatcaaacctgagaccttgaggaggagcacactccaaagtcccaagccaacaccat 29385799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 26459404 - 26459465
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| || ||||||||||||||||| | |||||||||||||||||    
T  26459404 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacca 26459465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 43215265 - 43215205
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||| ||| ||||| || ||||||||||||||||| | |||||||||||||||||    
T  43215265 agagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacca 43215205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 5668567 - 5668628
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccata 77  Q
    ||||||||| | | ||||| |||||||||||||||||| | | |||||||||||||||||||    
T  5668567 gagagaatcgatcctgagacctcgaggaggagcacacttccatgtcccaagccaataccata 5668628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 15137635 - 15137574
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| || |||||||||||||||||||| ||||||| || |||||    
T  15137635 cagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaagtcagtacca 15137574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 23552199 - 23552142
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    |||||||||| ||||||||| || ||||||||||||||||| | |||||||| |||||    
T  23552199 agagagaatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaata 23552142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 41519258 - 41519319
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| | ||| ||||| || |||||||||||||||||||| ||||||| ||||||||    
T  41519258 cagagagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaatacca 41519319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 43590985 - 43590928
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| |||||  | ||||||||||||||||| |||||||||||||||||||    
T  43590985 gagaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaatacca 43590928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 18363777 - 18363717
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||||||| ||||| || ||||||||||||||||| || || |||||| ||||||    
T  18363777 agagagaatcaaacctgagaccttgaggaggagcacactcccaaatctcaagcctatacca 18363717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 43663091 - 43663151
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    |||||| || ||| ||||||||||||||||| ||| |||||| |||||||| |||||||||    
T  43663091 gagagattcgaacctgagatctcgaggaggaccacgctcctaggtcccaagtcaataccat 43663151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 7309436 - 7309397
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcc 55  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  7309436 gagagaatcgaacttgagacctcgaggaggagcacactcc 7309397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 35513546 - 35513487
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||| |||| ||| |||||| ||||||||||||||||||  ||||||||||| |||||||    
T  35513546 gagaaaatcgaacatgagatatcgaggaggagcacactctcaagtcccaagcaaatacca 35513487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 28236587 - 28236637
Alignment:
Q  26 aacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    |||| |||| ||||||||||||| |||||| | ||||||||||||||||||    
T  28236587 aactagagacctcgaggaggagcgcactcccaggtcccaagccaataccat 28236637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 2962541 - 2962480
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| |||||||| ||||||||||||||||  | || |||| |||||||||    
T  2962541 cagagagaatcgaacctgagatcttgaggaggagcacactcacaggttccaaaccaatacca 2962480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 5579232 - 5579289
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||| |||||| ||||| || ||||||||||||||||| | |||||||||||| ||||    
T  5579232 gagagtcaaacctgagaccttgaggaggagcacactccaaggtcccaagccaacacca 5579289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 7721451 - 7721390
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| || ||||||||| ||||||| | ||||||| |||||||||    
T  7721451 cagagagaatcgaacatgagaccttgaggaggagtacactcccaggtcccaaaccaatacca 7721390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 22760941 - 22760884
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| || ||||||||||||||||| | |||||||| ||||||||    
T  22760941 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaatacca 22760884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 37085547 - 37085604
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||| | |||||||| ||||||||||| || ||||||||||||||||    
T  37085547 gagaatcgaacctgaaacctcgaggatgagcacactcccaaatcccaagccaatacca 37085604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 25021354 - 25021390
Alignment:
Q  39 gaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||||| | |||||||||||||||||    
T  25021354 gaggaggagcacactcccaggtcccaagccaatacca 25021390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 33181205 - 33181265
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||| ||||| ||| |||||||| |||  |||||||||||| |||||||||||| ||||||    
T  33181205 agagggaatcgaacctgagatcttgagttggagcacactcccaagtcccaagcctatacca 33181265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 39631925 - 39631865
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||| ||| ||||| || ||||||||||  ||||| | |||||||||||||||||    
T  39631925 agagagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaagccaatacca 39631865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 48984148 - 48984184
Alignment:
Q  39 gaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  48984148 gaggaggagcacactcccaagtcccaagcctatacca 48984184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 8278271 - 8278331
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8278271 gagataatcaaacttgagatctcgaggaggagcacactcccaagtcccaagccaataccat 8278331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 29075863 - 29075802
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| |||||||||||||||||||||||||| |  ||||||||||||||||    
T  29075863 cagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaatacca 29075802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 16773889 - 16773828
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| |||||||||||||||||||| | |||||||| ||||||||    
T  16773889 cagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaatacca 16773828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 25627139 - 25627078
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| || ||||||||||||||||| |||| ||||||||||||||    
T  25627139 cagagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaatacca 25627078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 17028259 - 17028317
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatac 73  Q
    |||| ||||||||| ||||| || ||||||||||||||||| ||||||||| |||||||    
T  17028259 agagggaatcaaacctgagaccttgaggaggagcacactcccaagtcccaacccaatac 17028317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 30883204 - 30883253
Alignment:
Q  26 aacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| || ||||||||||||||||| | |||||||||||||||||    
T  30883204 aacttgagaccttgaggaggagcacactcccaggtcccaagccaatacca 30883253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 14495801 - 14495860
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||  ||||| |||||||||||||||||||| |  ||||||| ||||||||    
T  14495801 gagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaatacca 14495860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 29210440 - 29210393
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtc 61  Q
    ||||||||||  ||||||| | ||||||||||||||||||||||||||    
T  29210440 cagagagaattgaacttgaaacctcgaggaggagcacactcctaagtc 29210393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 16436692 - 16436639
Alignment:
Q  21 aatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||| ||| ||||| || ||||||||||||||||| |||||||||||||||||||    
T  16436692 aatcgaacatgagaccttgaggaggagcacactcc-aagtcccaagccaatacca 16436639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 31074314 - 31074260
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagcc 68  Q
    ||||||||||| ||| |||||||| |||||||| |||||||| || |||||||||    
T  31074314 cagagagaatcgaacctgagatcttgaggaggaacacactccaaaatcccaagcc 31074260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 9842857 - 9842898
Alignment:
Q  31 gagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    |||| |||||||||||||||||||| |||||||||| |||||    
T  9842857 gagacctcgaggaggagcacactcccaagtcccaagtcaata 9842898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 14285243 - 14285186
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    ||||||||||| ||| ||||| || ||||||||||||||||| | || ||||||||||    
T  14285243 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggttccaagccaat 14285186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 16457876 - 16457831
Alignment:
Q  30 tgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| || ||||||||||||||||| | |||||||||||||||||    
T  16457876 tgagaccttgaggaggagcacactccaaggtcccaagccaatacca 16457831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 34984888 - 34984827
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| | ||| || ||||||||||||||||| | || ||||||||||||||    
T  34984888 cagagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaatacca 34984827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 37258360 - 37258421
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||| | || |||||||||||||||||||  |||||||| |||||||    
T  37258360 cagagagaatcgaacctgaaaccttgaggaggagcacactcctagatcccaagctaatacca 37258421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 21549132 - 21549192
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| |||| |||||||||  |  |||||||||||||||| | |||||||||||||||||    
T  21549132 agagaaaatcgaacttgagactttaaggaggagcacactcccaggtcccaagccaatacca 21549192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 35796638 - 35796674
Alignment:
Q  39 gaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||||||||||||||||| || |||||||||    
T  35796638 gaggaggagcacactcctaagtccaaaaccaatacca 35796674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 19016109 - 19016051
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  19016109 gagaatcaaacttgagacctcgaggaggagcacactcccaagtctcaagccaataccat 19016051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 7799031 - 7799090
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  7799031 gagagaatcgaatctgagatctcgaggaggagcacactcccaagtcccaagccaatacca 7799090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 11251169 - 11251108
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||    
T  11251169 cagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaatacca 11251108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 1729898 - 1729837
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||  | ||| || ||||||||||||||||| |||||||||||||||||||    
T  1729898 cagagagaatcaaatctaagacctagaggaggagcacactcccaagtcccaagccaatacca 1729837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 45026825 - 45026773
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaag 66  Q
    ||||||||||||||| ||||| || |||||||||||||||||||||| |||||    
T  45026825 cagagagaatcaaacatgagaccttgaggaggagcacactcctaagttccaag 45026773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 13803577 - 13803519
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    |||||| |||| ||| ||||| || ||||||||||||||||||||||| ||||||||||    
T  13803577 cagagataatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaata 13803519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 42327392 - 42327450
Alignment:
Q  17 agagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||| ||| ||||| || ||||||||||||||||| | |||||||||||||||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacca 42327450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 7667480 - 7667521
Alignment:
Q  31 gagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    |||||||| |||||||||||||||| ||||||||||||||||    
T  7667480 gagatctcaaggaggagcacactcccaagtcccaagccaata 7667521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 11062441 - 11062384
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    |||||||||||||| ||||| || |||||| |||||||||| |||| |||||||||||    
T  11062441 agagagaatcaaacctgagaccttgaggagaagcacactcccaagttccaagccaata 11062384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 23052521 - 23052578
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| || |||||| |||||||||| |||||||||||||||||||    
T  23052521 gagaatcgaacctgagaccttgaggagaagcacactcccaagtcccaagccaatacca 23052578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 30410543 - 30410604
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||| |||| ||| ||||  || ||||||||||||||||||| |||||||||||||||||    
T  30410543 cagagaaaatcgaacatgagtccttgaggaggagcacactcctaggtcccaagccaatacca 30410604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 39715070 - 39715013
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| |||||||||||||||||||| | |||||||| ||||||||    
T  39715070 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaatacca 39715013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 21939121 - 21939173
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaa 70  Q
    ||||||| ||| |||||||||||||||||||||||||  |||||| |||||||    
T  21939121 gagaatcgaacctgagatctcgaggaggagcacactctcaagtccaaagccaa 21939173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 42602634 - 42602575
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||| | ||| || ||| ||||||||||||| | |||||||||||||||||    
T  42602634 gagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaatacca 42602575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 7599978 - 7600032
Alignment:
Q  17 agagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    |||||||| ||| ||| | ||||||||||||||||||| |||||| |||||||||    
T  7599978 agagaatcgaacatgaaacctcgaggaggagcacactcttaagtctcaagccaat 7600032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 18825415 - 18825362
Alignment:
Q  21 aatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||||||| || ||| ||||||||||||||| |||||||||||| ||||    
T  18825415 aatcaaacttgagaccttgag-aggagcacactcctaggtcccaagccaacacca 18825362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 24191904 - 24191858
Alignment:
Q  30 tgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    ||||||||| |||||||||||||||  | ||||||||||||||||||    
T  24191904 tgagatctcaaggaggagcacactctcaggtcccaagccaataccat 24191858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 26545919 - 26545861
Alignment:
Q  17 agagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||||||||||| |||||| ||||||||||| | |  |||||||| |||||||    
T  26545919 agagaatcaaacttgagacctcgagaaggagcacacttccagatcccaagctaatacca 26545861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 1435145 - 1435085
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| |||| |||| || |||||| ||||||||||||| |||||||||| |||||    
T  1435145 cagagagaatcgaact-gagaccttgaggagaagcacactcctaaatcccaagccagtacca 1435085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 3001461 - 3001400
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||| |||| ||| ||||||||| ||||||||||||||||||  || |||| ||||||||    
T  3001461 cagagataatcgaacctgagatctcaaggaggagcacactcctagatctcaagtcaatacca 3001400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 21213847 - 21213790
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| ||| ||||||| |||||||| | |||||||||||||||||    
T  21213847 gagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaatacca 21213790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29503349 - 29503292
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| || ||||||||||||||||| | ||||||| |||||||||    
T  29503349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaatacca 29503292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 33569852 - 33569909
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    ||||||||||| ||| ||||| |||||||| ||||||||| | |||||| ||||||||    
T  33569852 cagagagaatcgaacctgagacctcgaggaagagcacacttccaagtcctaagccaat 33569909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 37480153 - 37480096
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| || ||||||||||||||||  | |||||||||||||||||    
T  37480153 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatacca 37480096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 37755977 - 37756026
Alignment:
Q  26 aacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| |||||| ||||||||| ||| | |||||||||||||||||    
T  37755977 aacttgagacctcgagtaggagcacattcccaggtcccaagccaatacca 37756026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 4262298 - 4262354
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    ||||||||| ||| ||||| || ||||||||||||||| | | ||||||||||||||    
T  4262298 gagagaatcgaacctgagaccttgaggaggagcacactgccaggtcccaagccaata 4262354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 12517751 - 12517803
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaa 70  Q
    ||||||||||| ||||| || ||||||||||| ||||| | ||||||||||||    
T  12517751 gagaatcaaacatgagaccttgaggaggagcaaactccaaggtcccaagccaa 12517803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 19322849 - 19322789
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||  |||| || || |||||||||||||| | ||||||| |||||||||    
T  19322849 agagagaatcaaaccagagaccttgaagaggagcacactcccaggtcccaaaccaatacca 19322789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 21195671 - 21195731
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||| ||||| ||| ||||| || ||||||||||||||||| |||| ||||||| ||||||    
T  21195671 agagggaatcgaacctgagaccttgaggaggagcacactcccaagttccaagcctatacca 21195731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 29197375 - 29197431
Alignment:
Q  19 agaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||| ||| |||||  || |||||||||||||||| |||||||||| ||||||||    
T  29197375 agaatcgaacatgagacatcaaggaggagcacactcccaagtcccaagtcaatacca 29197431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 41504947 - 41504991
Alignment:
Q  31 gagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| ||||||||||||| ||||| | |||||||||||||||||    
T  41504947 gagatatcgaggaggagcatactcccaggtcccaagccaatacca 41504991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 42860424 - 42860372
Alignment:
Q  20 gaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    ||||| ||||||||| |||||||||||||||||||| | ||| |||| |||||    
T  42860424 gaatcgaacttgagacctcgaggaggagcacactcccaggtctcaagtcaata 42860372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 13113958 - 13114015
Alignment:
Q  17 agagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacc 74  Q
    |||||||||||||| |||||||||||||||||||||| | | ||||||||||||||||    
T  13113958 agagaatcaaacttcagatctcgaggaggagcacacttcaaggtcccaagccaatacc 13114015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 33549184 - 33549125
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||| ||||| |||||||||||||||||||| | |||||||||||||||||    
T  33549184 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacca 33549125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 6776601 - 6776662
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||||||||||||||  |||||||||||||||| || |  ||||||||||||||||    
T  6776601 cagagagaatcaaacttgagacatcgaggaggagcacacccccagatcccaagccaatacca 6776662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 21418548 - 21418491
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| |||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  21418548 gagaatcgaacttgagacatggaggaggagcacactcccaagtcccaagccaatacca 21418491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 12188298 - 12188358
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||| ||||||| | || ||||||||||||||||| | |||||||||||||||||    
T  12188298 agagagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaatacca 12188358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 20863456 - 20863396
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||||||  ||||| || ||||||||||||||||| |||||||||||||| ||||    
T  20863456 agagagaatcaaatctgagaccttgaggaggagcacactccaaagtcccaagccaacacca 20863396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 31622994 - 31623046
Alignment:
Q  23 tcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||| ||||| |||||||||||||||||||| | |||||||||||||||||    
T  31622994 tcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacca 31623046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 10338174 - 10338229
Alignment:
Q  20 gaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| ||| ||||| || ||||||||||||||||||| |||||||||||||||||    
T  10338174 gaatcgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatacca 10338229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 6758416 - 6758477
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| | ||||||| ||||||| |||||||||||| || ||| ||||||||||||    
T  6758416 cagagagaatcgatcttgagacctcgaggtggagcacactcccaaatcctaagccaatacca 6758477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 19162863 - 19162810
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagcca 69  Q
    ||||||||| ||| ||||||||||||||||||||||||||   |||||||||||    
T  19162863 gagagaatcgaacctgagatctcgaggaggagcacactcccgtgtcccaagcca 19162810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 12633089 - 12633033
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    ||||||||| ||| ||||||||||| |||||||||||||| || ||||||| |||||    
T  12633089 gagagaatcgaacatgagatctcgaagaggagcacactcccaaatcccaagtcaata 12633033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 13661594 - 13661543
Alignment:
Q  22 atcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatac 73  Q
    ||||||| ||||| |||||||||||||||||||| ||||  |||||||||||    
T  13661594 atcaaacctgagacctcgaggaggagcacactcccaagtgtcaagccaatac 13661543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 28841494 - 28841435
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||||||||| || ||||||||||||||||||  ||| |||||||| ||||    
T  28841494 gagagaatcgaacttgagaccttgaggaggagcacactccttggtctcaagccaaaacca 28841435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 34786450 - 34786507
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatac 73  Q
    ||||||||| |||||||||  ||||| ||||||||||||| |  ||||||||||||||    
T  34786450 gagagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 34786507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 27093355 - 27093416
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||| ||||| || ||||||||||||||||| |||| ||||||||||||||    
T  27093355 cagagagaatcaaacctgagaccttgaggaggagcacactcccaagttccaagccaatacca 27093416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 27259243 - 27259185
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    ||||||||||||||| ||| | |||||||||||||||||||| | ||||||||||||||    
T  27259243 cagagagaatcaaacctgaaacctcgaggaggagcacactcccaggtcccaagccaata 27259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 10445133 - 10445190
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    ||||||||||| ||| ||||| |||||||||||||||||||| | |||||||||||||    
T  10445133 cagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaat 10445190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 32651433 - 32651493
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||| ||  |||||||| ||||||||||||||||| | |||||||||||||||||    
T  32651433 agagagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaatacca 32651493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 46518710 - 46518649
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||| ||| | || ||||||||||||||||| |  ||||||||||||||||    
T  46518710 cagagagaatcaaacctgaaaccttgaggaggagcacactcccagatcccaagccaatacca 46518649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 30510194 - 30510254
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||| ||| ||||| |||||| ||||||| ||||||| ||||||||||| |||||    
T  30510194 agagagaatcgaacctgagacctcgagaaggagcatactcctaggtcccaagccagtacca 30510254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 36720462 - 36720402
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||| ||| ||| | |||||||||||||||||||| |  ||||||||||||||||    
T  36720462 agagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaatacca 36720402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 37788460 - 37788520
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||| ||| ||||| || ||||||||||||||||||| || ||||| ||||||||    
T  37788460 agagagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaatacca 37788520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 21960631 - 21960572
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||  ||||| |||||||||||||||||||  | |||||||||||||||||    
T  21960631 gagagaatcgaatctgagacctcgaggaggagcacactctcaggtcccaagccaatacca 21960572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 31520601 - 31520656
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    ||||||||||||| | ||| |||||||||||||||||||| |  ||||||||||||    
T  31520601 gagagaatcaaacctaagacctcgaggaggagcacactcccagatcccaagccaat 31520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 51903874 - 51903933
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||| ||||| | |||||||||||||||||| |  ||||||||||||||||    
T  51903874 gagagaatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaatacca 51903933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 2597217 - 2597275
Alignment:
Q  17 agagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| || ||| ||||| ||| ||||||||||||||||||| ||| ||||||||||||    
T  2597217 agagattcgaacctgagacctcaaggaggagcacactcctaaatccgaagccaatacca 2597275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 14339688 - 14339631
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| |||||  | ||||||||||||||||| || ||||||||||||||||    
T  14339688 gagaatcgaacctgagacattgaggaggagcacactcccaaatcccaagccaatacca 14339631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 31608518 - 31608559
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcc 55  Q
    ||||||||||||||  ||||| ||||||||||||||||||||    
T  31608518 cagagagaatcaaatctgagacctcgaggaggagcacactcc 31608559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 47454615 - 47454672
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| |||||||||||||||||||| |  || |||||||||||||    
T  47454615 gagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaatacca 47454672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 2667943 - 2667883
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| |||| ||| ||||| |||||||| ||||||||||| |  ||||||||||||||||    
T  2667943 agagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaatacca 2667883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 8075146 - 8075182
Alignment:
Q  39 gaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  8075146 gaggaggagcacactcccaagtcccaagcctatacca 8075182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 15319 - 15378
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||| ||||| |||||||||||||||||||| | |||||||||||||||||    
T  15319 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacca 15378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 968442 - 968383
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||| ||||| |||||||||||||||||||| | |||||||||||||||||    
T  968442 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacca 968383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 6536602 - 6536541
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||  ||| ||||| || ||||||||||||||||||| |||||||||||||||||    
T  6536602 cagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatacca 6536541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 16852418 - 16852361
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| |||||||||||||||||||| | |||||||||||||||||    
T  16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacca 16852361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 44780109 - 44780165
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    |||| ||||||||| ||||| || ||||||||||||||||| |||||||||||||||    
T  44780109 agagggaatcaaacctgagaccttgaggaggagcacactcccaagtcccaagccaat 44780165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 34966851 - 34966906
Alignment:
Q  21 aatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    |||||||||||||| ||||| ||| |||||||||| ||||| ||||||||||||||    
T  34966851 aatcaaacttgagacctcgaagagtagcacactcccaagtctcaagccaataccat 34966906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 6436576 - 6436610
Alignment:
Q  41 ggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||||||||||||||||||||||||||||    
T  6436576 ggaggagcacactcctaagtcccaagccaatacca 6436610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 29431090 - 29431033
Alignment:
Q  17 agagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacc 74  Q
    |||||||| ||| ||||  ||| |||||||||||||||| ||||||||||||||||||    
T  29431090 agagaatcgaacctgaggcctcaaggaggagcacactcccaagtcccaagccaatacc 29431033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 11819857 - 11819797
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||| ||||| ||| ||||| || ||||||||||||||||| |||||||||||| ||||||    
T  11819857 agagtgaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctatacca 11819797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 27750811 - 27750751
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||| ||||| ||| ||||| || ||||||||||||||||| |||||||||||| ||||||    
T  27750811 agagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctatacca 27750751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 3624660 - 3624601
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||| ||||| || || |||||||||||||| | |||||||||||||||||    
T  3624660 gagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaatacca 3624601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 29858049 - 29858104
Alignment:
Q  20 gaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| ||| ||||| ||||||||||||||||||||   |||||||||||||||||    
T  29858049 gaatcgaacctgagacctcgaggaggagcacactccctggtcccaagccaatacca 29858104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 43969019 - 43969054
Alignment:
Q  41 ggaggagcacactcctaagtcccaagccaataccat 76  Q
    ||||||||||||||||||| ||||||||||||||||    
T  43969019 ggaggagcacactcctaagccccaagccaataccat 43969054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 15948066 - 15948104
Alignment:
Q  37 tcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  15948066 tcgaggaggagcatactcccaagtcccaagccaatacca 15948104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 2203558 - 2203513
Alignment:
Q  30 tgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| || ||||||||||||||||| | |||||||||||||||||    
T  2203558 tgagaccttgaggaggagcacactcccaggtcccaagccaatacca 2203513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 16843790 - 16843855
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccataaata 81  Q
    ||||||||| ||| |||||||| | ||||||||||||||| ||| || | |||||||||| |||||    
T  16843790 gagagaatcgaacctgagatcttgcggaggagcacactcccaagacctacgccaataccacaaata 16843855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 18540380 - 18540319
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| || |||||| || ||||||| | |||||||||||||||||    
T  18540380 cagagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaatacca 18540319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 19703485 - 19703542
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| || ||||||||||||||||  | |||||||||||||||||    
T  19703485 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatacca 19703542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 28783138 - 28783081
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| || ||||||||||||||||| | ||| |||||||||||||    
T  28783138 gagaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaatacca 28783081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 13015507 - 13015448
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||| |||||  ||||||||||||||||||| |||||||||||||||||||    
T  13015507 gagagaatcgaacatgagacttcgaggaggagcacactcccaagtcccaagccaatacca 13015448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 4249259 - 4249198
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||| ||||| || ||||||||||||||||| || ||||||||| ||||||    
T  4249259 cagagagaatcaaacctgagaccttgaggaggagcacactccaaaatcccaagcctatacca 4249198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 19238575 - 19238632
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| |||  |||| |||||||||||||||||||| |||||||||||||||||||    
T  19238575 gagaatcgaacccgagacctcgaggaggagcacactcccaagtcccaagccaatacca 19238632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 37109345 - 37109406
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| || ||||||||||||||||| | |||||||||||||||||    
T  37109345 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacca 37109406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 7949448 - 7949508
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacc 74  Q
    ||||||||||| ||| ||||| || ||||||||||||||||| | ||||||||||||||||    
T  7949448 cagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacc 7949508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 8030199 - 8030259
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||| ||||| ||||||||| || ||||||||||||||||| |||||||||||| ||||||    
T  8030199 agagggaatcgaacttgagaccttgaggaggagcacactcccaagtcccaagcctatacca 8030259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 24234725 - 24234666
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||||||||| ||  |||| ||||||||||| |||||||||||||||||||    
T  24234725 gagagaatcgaacttgagaccttcaggatgagcacactcccaagtcccaagccaatacca 24234666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 49576890 - 49576949
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||| ||| ||||| || ||||||||||||||||| |||||| ||||||||||||    
T  49576890 gagagaatcgaacctgagaccttgaggaggagcacactcccaagtccaaagccaatacca 49576949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 4185171 - 4185114
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| | ||||||| ||||||||||| ||||||| |||||||||| |||||||||    
T  4185171 gagaatcgatcttgagacctcgaggaggatcacactcttaagtcccaaaccaatacca 4185114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 23378037 - 23377980
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaata 72  Q
    |||||||||| ||| ||||| || ||||||||||||||||| | ||||||||||||||    
T  23378037 agagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaata 23377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 31759668 - 31759713
Alignment:
Q  30 tgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||    
T  31759668 tgagaccttgaggaggagcacactcccaagtcccaagccaatacca 31759713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 32992690 - 32992638
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaa 70  Q
    ||||||| ||||||||| || ||||||||||||||||| | ||||||||||||    
T  32992690 gagaatcgaacttgagaccttgaggaggagcacactccaaggtcccaagccaa 32992638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 51250522 - 51250577
Alignment:
Q  20 gaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| |||||||||||| |||| |||||||||||| |  ||||||||||||||||    
T  51250522 gaatcgaacttgagatcttgaggcggagcacactcccagatcccaagccaatacca 51250577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 51954194 - 51954139
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    |||| |||||||| ||||| |||||||||||||| ||||| |||||||||| ||||    
T  51954194 gagataatcaaacctgagacctcgaggaggagcatactcccaagtcccaagtcaat 51954139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 39509148 - 39509090
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    ||||||| ||| ||||| |||||||||||||||||||| |  |||||||||| ||||||    
T  39509148 gagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccattaccat 39509090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 2622389 - 2622446
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    ||||||||||| ||| |||||  | ||||||||||||||||| | |||||||||||||    
T  2622389 cagagagaatcgaacctgagacatggaggaggagcacactcccaggtcccaagccaat 2622446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 17618347 - 17618302
Alignment:
Q  30 tgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| |||||||||||||||||||| | ||| |||||||||||||    
T  17618347 tgagacctcgaggaggagcacactcccaggtctcaagccaatacca 17618302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 19229206 - 19229262
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| |||||||||||||||| | |||||||||| ||||||||||    
T  19229206 gagaatcgaacctgagacctcgaggaggagcaca-ttctaagtcccaggccaatacca 19229262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 19531996 - 19532057
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||| | ||  ||||||||||| |||||| |||||||||||||||||    
T  19531996 cagagagaatcgaacctgaaaacttaaggaggagcacgctcctatgtcccaagccaatacca 19532057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 19680782 - 19680843
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| | ||| || ||||| ||||||||||| ||||||||||| |||||||    
T  19680782 cagagagaatcgaacctaagaccttgaggaagagcacactcccaagtcccaagcgaatacca 19680843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 30938217 - 30938274
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| |||||||||||||||||||| |  |||||| |||||||||    
T  30938217 gagaatcgaacctgagacctcgaggaggagcacactccaagatcccaaaccaatacca 30938274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 37274453 - 37274510
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaat 71  Q
    ||||||||||| ||| | ||| || ||||||||||||||||| | |||||||||||||    
T  37274453 cagagagaatcgaacctaagaccttgaggaggagcacactcccaggtcccaagccaat 37274510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 38869850 - 38869789
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||| ||||| ||| ||||| || ||||||||||||||||| |  ||||||||||||||||    
T  38869850 cagagggaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatacca 38869789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 40283985 - 40284042
Alignment:
Q  19 agaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    |||||||||| | ||| || ||||||  ||||||||| ||||||||||||||||||||    
T  40283985 agaatcaaaccttagaccttgaggagatgcacactcccaagtcccaagccaataccat 40284042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 55427198 - 55427255
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||| ||| ||||| |||||| ||||||| ||||| | |||||||||||||||||    
T  55427198 gagaatcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaatacca 55427255  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 4911255 - 4911287
Alignment:
Q  43 aggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||||||||||||| |||||||    
T  4911255 aggagcacactcctaagtcccaagctaatacca 4911287  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 7292793 - 7292853
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||| ||| |||||  | ||||||||||||||||| | || ||||||||||||||    
T  7292793 agagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaatacca 7292853  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 46295175 - 46295123
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaa 70  Q
    ||||||| ||| ||||| || ||||||||||||||||| | ||||||||||||    
T  46295175 gagaatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaa 46295123  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 53496959 - 53496899
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacc 74  Q
    ||||||||||||||  |||||  | ||||||||||||||||| | ||||||| ||||||||    
T  53496959 cagagagaatcaaatctgagactttgaggaggagcacactcccaggtcccaaaccaatacc 53496899  T

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Target: scaffold0299 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 11610 - 11549
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| |||||||||||||||||||| |  ||||||||||||||||    
T  11610 cagagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaatacca 11549  T

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Target: scaffold0172 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 15775 - 15832
Alignment:
Q  18 gagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||    
T  15775 gagaatcaaacttgagaccttgaggaggagcatactccaaaatcccaagccaatacca 15832  T

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Target: scaffold0211 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 24112 - 24073
Alignment:
Q  37 tcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  24112 tcgaagaggagcacactcctaagtcccaagtcaataccat 24073  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 45753 - 45812
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatac 73  Q
    ||||||||||| ||| ||||| ||| ||||||| |||||||||| |||||||| ||||||    
T  45753 cagagagaatcgaacatgagacctcaaggaggaacacactcctaggtcccaaggcaatac 45812  T

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Target: scaffold0368 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 14961 - 15002
Alignment:
Q  16 gagagaatcaaacttgagatctcgaggaggagcacactccta 57  Q
    ||||||||||||  ||||| ||||||||||||||||||||||    
T  14961 gagagaatcaaatatgagacctcgaggaggagcacactccta 15002  T

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Target: scaffold0180 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 19956 - 20017
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    ||||||||||| ||| ||||| || ||||||||||| ||||| | || ||||||||||||||    
T  19956 cagagagaatcgaacctgagaccttgaggaggagcatactcccaggttccaagccaatacca 20017  T

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Target: scaffold0126 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 25341 - 25402
Alignment:
Q  14 cagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||| |||| ||| ||||| || ||| ||||||||||||| ||||| |||||||||||||    
T  25341 cagagataatcgaacctgagaccttgagaaggagcacactcccaagtctcaagccaatacca 25402  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 19846 - 19903
Alignment:
Q  19 agaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaataccat 76  Q
    |||||| ||||||||| ||| |||||||||| ||||| |  |||||||||||||||||    
T  19846 agaatcgaacttgagacctcaaggaggagcagactcccagatcccaagccaataccat 19903  T

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Target: scaffold1367 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 835 - 895
Alignment:
Q  15 agagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||| ||| |||||  ||||||||||||||| ||| |  ||||||||||||||||    
T  835 agagagaatcgaacctgagacttcgaggaggagcacattcccagatcccaagccaatacca 895  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 6938 - 6974
Alignment:
Q  39 gaggaggagcacactcctaagtcccaagccaatacca 75  Q
    |||||||||||||||||  ||||||||||||||||||    
T  6938 gaggaggagcacactccccagtcccaagccaatacca 6974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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