View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_low_59 (Length: 210)

Name: NF12740_low_59
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_low_59
NF12740_low_59
[»] chr8 (2 HSPs)
chr8 (50-194)||(21239283-21239427)
chr8 (126-190)||(30911384-30911448)
[»] chr2 (4 HSPs)
chr2 (139-188)||(8024799-8024848)
chr2 (126-187)||(8192481-8192542)
chr2 (118-187)||(32526215-32526284)
chr2 (126-194)||(4618808-4618876)
[»] chr5 (2 HSPs)
chr5 (126-174)||(21042668-21042716)
chr5 (133-187)||(36895438-36895492)
[»] chr6 (2 HSPs)
chr6 (133-187)||(3907554-3907608)
chr6 (139-187)||(17149586-17149634)
[»] chr4 (3 HSPs)
chr4 (78-108)||(48992474-48992504)
chr4 (134-187)||(7093390-7093443)
chr4 (148-188)||(19220561-19220601)
[»] chr3 (2 HSPs)
chr3 (126-188)||(50582998-50583060)
chr3 (126-187)||(4252526-4252587)
[»] chr7 (1 HSPs)
chr7 (132-176)||(37056230-37056274)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 21239283 - 21239427
Alignment:
Q  50 aatatacatagcaactattatatcactataaactatgcaaaagaaattaatatgtgatgtaaactacacatttagagttggcttagtgattggtttgcga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  21239283 aatatacatagcaactattatatcactataaactatgcaaaagaaattaatatgtgatgtaaactacacatttagagttggcttagtggttggcttgcga 21239382  T
Q  150 tcttggagtgtgttcctttcaaggtttcaagttcgattttccctg 194  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  21239383 tcttggagtgtgttcctttcaaggtttcaagtttgattttccctg 21239427  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 30911448 - 30911384
Alignment:
Q  126 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattttc 190  Q
    |||||| || |||||| |||| ||||||||||| || |||| ||||||||||| ||| |||||||    
T  30911448 gttggcctaatgattgatttgagatcttggagtttgctcctctcaaggtttcatgtttgattttc 30911384  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 8024848 - 8024799
Alignment:
Q  139 ttggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattt 188  Q
    |||||||||||| |||||||||||| || |||||||||||||||||||||    
T  8024848 ttggtttgcgatgttggagtgtgtttctctcaaggtttcaagttcgattt 8024799  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 8192542 - 8192481
Alignment:
Q  126 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 187  Q
    |||||| ||||| |||| ||| |||||||||||||| |||| ||||||| ||| ||||||||    
T  8192542 gttggcctagtggttggcttgggatcttggagtgtgctcctctcaaggtctcaggttcgatt 8192481  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 32526284 - 32526215
Alignment:
Q  118 catttagagttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 187  Q
    ||||| |||||||||||||| ||| |||| ||||||| ||| || |||| ||||||| ||| ||||||||    
T  32526284 catttggagttggcttagtggttgatttgggatcttgaagtttgctcctctcaaggtctcaggttcgatt 32526215  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 4618876 - 4618808
Alignment:
Q  126 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattttccctg 194  Q
    |||||| ||||| |||| |||  |||||||||| || |||| ||||||||||| ||||||||| |||||    
T  4618876 gttggcctagtggttggcttggaatcttggagtatgctcctctcaaggtttcaggttcgatttcccctg 4618808  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 21042716 - 21042668
Alignment:
Q  126 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggt 174  Q
    ||||| ||||||||||||||| ||||||||||| || ||||||||||||    
T  21042716 gttggtttagtgattggtttgggatcttggagtttgctcctttcaaggt 21042668  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 36895438 - 36895492
Alignment:
Q  133 tagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 187  Q
    |||||||| | ||| |||||||||||||| |||| ||||||||||| ||||||||    
T  36895438 tagtgattagcttgggatcttggagtgtgctcctctcaaggtttcatgttcgatt 36895492  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 3907554 - 3907608
Alignment:
Q  133 tagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 187  Q
    ||||| |||||||| |||||||| ||||| |||| ||||| ||||||||||||||    
T  3907554 tagtggttggtttgggatcttggggtgtgctcctctcaagatttcaagttcgatt 3907608  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 17149634 - 17149586
Alignment:
Q  139 ttggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 187  Q
    |||||||| |||||||||||||| |||| ||||||| ||| ||||||||    
T  17149634 ttggtttgggatcttggagtgtgctcctctcaaggtctcaggttcgatt 17149586  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 108
Target Start/End: Complemental strand, 48992504 - 48992474
Alignment:
Q  78 taaactatgcaaaagaaattaatatgtgatg 108  Q
    |||||||||||||||||||||||||||||||    
T  48992504 taaactatgcaaaagaaattaatatgtgatg 48992474  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 7093390 - 7093443
Alignment:
Q  134 agtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 187  Q
    |||| |||| ||| |||||||||||||| |||||||||||||| | ||||||||    
T  7093390 agtggttggcttgggatcttggagtgtgctcctttcaaggttttaggttcgatt 7093443  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 19220561 - 19220601
Alignment:
Q  148 gatcttggagtgtgttcctttcaaggtttcaagttcgattt 188  Q
    |||||||||||||| |||| ||||||||||| |||||||||    
T  19220561 gatcttggagtgtgctcctctcaaggtttcaggttcgattt 19220601  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 50582998 - 50583060
Alignment:
Q  126 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattt 188  Q
    |||||| ||||| |||||||| ||||||||||| || |||| | ||||||||| |||||||||    
T  50582998 gttggcctagtggttggtttgggatcttggagtttgctcctcttaaggtttcaggttcgattt 50583060  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 4252587 - 4252526
Alignment:
Q  126 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 187  Q
    |||||| ||||| |||| ||| |||||||||||||| |||| ||||||| ||||||| ||||    
T  4252587 gttggcctagtggttggcttgagatcttggagtgtgctcctctcaaggtctcaagtttgatt 4252526  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 37056230 - 37056274
Alignment:
Q  132 ttagtgattggtttgcgatcttggagtgtgttcctttcaaggttt 176  Q
    |||||| |||||||| |||||||||||||| |||| |||||||||    
T  37056230 ttagtggttggtttgtgatcttggagtgtgctcctctcaaggttt 37056274  T

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