View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_6 (Length: 497)
Name: NF12740_low_6
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 28734243 - 28734568
Alignment:
| Q |
1 |
tatccaatctagaaaaaggcaaccctaaactatctttatcaagaaggtgttgaatgaaggggggtggggcaggccaccattgggaa-gaaaacaaagaga |
99 |
Q |
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| T |
28734243 |
tatccaatctagaaaaaggcaaccctaaactatctttatcaagaaggtgttgaatgaaggggggtggggcaggccaccattgggaaagaaaacaaagaga |
28734342 |
T |
|
| Q |
100 |
gcccttgtccatttttagccaattaatgcatctgccaccatgttaccttccctaagagtatgcacacaagagcaggtaatactacttttacaaaatttga |
199 |
Q |
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| T |
28734343 |
gcccttgtccatttttagccaattaatgcatctgccaccatattaccttccctaagattatgcacacaagagcaggtaatact---tttacaaaatttga |
28734439 |
T |
|
| Q |
200 |
tacaattgttccacctgattctcattttccaagggacaccaacatccttgttaaaagcattaaccactatgattgagtcagttttcaaacagatgttact |
299 |
Q |
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| T |
28734440 |
tacaattgttccatctaattctcattttccaagggaccccaacatccttattaaaagcattaaccactatgattgagtcagttttcaaacagatgttact |
28734539 |
T |
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| Q |
300 |
caaactcattgccattgctttatcaatgg |
328 |
Q |
| |
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| T |
28734540 |
caaactcattgccattgctttatcaatgg |
28734568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 355 - 482
Target Start/End: Original strand, 28734562 - 28734689
Alignment:
| Q |
355 |
tcaatgggagaggcatatccaatgttgctggagatagctcctaagaagactgagttggagtctctgatcacaataccaatggccccacaagggtgagccc |
454 |
Q |
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| T |
28734562 |
tcaatgggagaggcatatccaatgttgctggagatagctcctaagaagactgagttggagtctctgatcacaataccaatggccccacaagggtgagccc |
28734661 |
T |
|
| Q |
455 |
ctatagaagattcatcacaattgaactt |
482 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
28734662 |
ctatagaagattcatcacaattgaactt |
28734689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 21285709 - 21285644
Alignment:
| Q |
317 |
ctttatcaatggccaacataaaagcacaaaattcagcttcaatgggagaggcatatccaatgttgc |
382 |
Q |
| |
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| T |
21285709 |
ctttgtcaatagccaacataaaggcactaaattcagcttccaaaggagaggcatgtccaatgttgc |
21285644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 482
Target Start/End: Original strand, 8634143 - 8634531
Alignment:
| Q |
87 |
gaaaacaaagagagcccttgtccatttttagccaattaatgcatctgccaccatgttaccttccctaagagtatgcacacaagagcaggtaatactactt |
186 |
Q |
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| T |
8634143 |
gaaaacaaagagagcccttgtccatgcttggccaac----gcatctgcaaccatgttgccttccctaagaatatgcacacaaacacaagcaatgtt---t |
8634235 |
T |
|
| Q |
187 |
ttacaaaatttgatacaattgttccacctgattctcattttccaagggacaccaacatccttgttaaaagcattaaccactatgattgagtcagttttca |
286 |
Q |
| |
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| T |
8634236 |
tgacaaaacctgagacagttgtgccatcttattctcattttccaagggacacccaccatcttgtgaaaggcttgaaaaactttaatggaatctgtttcca |
8634335 |
T |
|
| Q |
287 |
aacagatgttactcaaactcattgccattgctttatcaatggccaacataaaagcacaaaattcagcttcaatgggagaggcatatccaatgttgctgga |
386 |
Q |
| |
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| T |
8634336 |
ggcagatgttgctcaaacccatttccatggccttttcaatggctagcattaaggcacaaaattcagcctctatagaagtagcatgtccaatgttactaga |
8634435 |
T |
|
| Q |
387 |
gatagctcctaagaagactgagttggagtctctgatcacaataccaatggccccacaagggtgagcccctatagaagattcatcacaattgaactt |
482 |
Q |
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| T |
8634436 |
taaggcccccaaaaacataaactggtagtctctaagcactatgccaatggcaccacaagggtgtgccccaacagaagatccatcacaattgaactt |
8634531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 170
Target Start/End: Complemental strand, 25811998 - 25811883
Alignment:
| Q |
51 |
tgaatgaaggggggtggggcaggccaccattgggaagaaaacaaagagagcccttgtccatttttagccaattaatgcatctgccaccatgttaccttcc |
150 |
Q |
| |
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| T |
25811998 |
tgaaggaaagggggtggtgaaggccaccactgagtggaaaataaagagagaccttgtccatgtttggccaaa----gcatctgccaccatgttcccttct |
25811903 |
T |
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| Q |
151 |
ctaagagtatgcacacaaga |
170 |
Q |
| |
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| T |
25811902 |
ctaaaagtgtgcacacaaga |
25811883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 170
Target Start/End: Complemental strand, 12404059 - 12403944
Alignment:
| Q |
51 |
tgaatgaaggggggtggggcaggccaccattgggaagaaaacaaagagagcccttgtccatttttagccaattaatgcatctgccaccatgttaccttcc |
150 |
Q |
| |
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|||| ||| |||||||| | ||||||||| || | ||||| |||||||| || ||||||| ||| ||||| ||||||||||||||||| ||||| |
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| T |
12404059 |
tgaaggaaagggggtggtgaaggccaccactgagtggaaaataaagagagaccatgtccatgtttggccaaa----gcatctgccaccatgttcccttct |
12403964 |
T |
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| Q |
151 |
ctaagagtatgcacacaaga |
170 |
Q |
| |
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|||| ||| ||||||||||| |
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| T |
12403963 |
ctaaaagtgtgcacacaaga |
12403944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 29864184 - 29864154
Alignment:
| Q |
128 |
catctgccaccatgttaccttccctaagagt |
158 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
29864184 |
catctgccaccatgttaccttccctaagagt |
29864154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 17635806 - 17635750
Alignment:
| Q |
126 |
tgcatctgccaccatgttaccttccctaagagtatgcacacaagagcaggtaatact |
182 |
Q |
| |
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||||||||||||||||||||| || ||| || |||| |||||||| ||| ||||||| |
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| T |
17635806 |
tgcatctgccaccatgttaccctctctatgaatatgaacacaagaacagataatact |
17635750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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