View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12741_high_3 (Length: 428)
Name: NF12741_high_3
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12741_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 26494917 - 26495320
Alignment:
| Q |
7 |
ggagcagagaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttcat |
106 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26494917 |
ggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttcat |
26495016 |
T |
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| Q |
107 |
taccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatccactagaaaatcaaatttctctcaggaactagattcaaca |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
26495017 |
taccaggaagtaatgttgatttgacagaaaaacaggaatttacaatggtgatgaaatatccactagaagctcaaatttctctcaggaattagattcaaca |
26495116 |
T |
|
| Q |
207 |
attggagacattttataggacatgatcatgattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacacatttagat |
306 |
Q |
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| T |
26495117 |
attggagacattttataggacatgatcaggattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacacatttagat |
26495216 |
T |
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| Q |
307 |
ataaatgatacattgatgccatagagcaatgatacaaatatagcaatgtaaggttagtttacaacatcaatcaactatggtgtaaatatatgtgtatatc |
406 |
Q |
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| T |
26495217 |
ataaatgacacattgatgccatagagcaatgatacaaatatagcaatgtatggttagtttacaacatcaatcaaccatggtgtaaatatatgtgtgtgtc |
26495316 |
T |
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| Q |
407 |
tgtg |
410 |
Q |
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|||| |
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| T |
26495317 |
tgtg |
26495320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 26506944 - 26507105
Alignment:
| Q |
7 |
ggagcagagaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttcat |
106 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||||||| | ||||| |||| ||||||||| ||||||||||||| |
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| T |
26506944 |
ggagcaggaaggaggatttgtcctgcctataacttggcaatgctccatgtagagtactttgtgacaaatttagtttggaactttgaatggaagacttcat |
26507043 |
T |
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| Q |
107 |
taccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca |
168 |
Q |
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| T |
26507044 |
taccagaaagtaatgttgatttgtcagaaaaacaggaatttactatggtgatgaaatatcca |
26507105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 41127340 - 41127405
Alignment:
| Q |
15 |
gaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggt |
80 |
Q |
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| T |
41127340 |
gaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggt |
41127405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 2294246 - 2294295
Alignment:
| Q |
119 |
atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca |
168 |
Q |
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||||||||||||| |||| ||||||||| || |||||||||||| ||||| |
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| T |
2294246 |
atgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatcca |
2294295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 2310577 - 2310626
Alignment:
| Q |
119 |
atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca |
168 |
Q |
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||||||||||||| |||| ||||||||| || |||||||||||| ||||| |
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| T |
2310577 |
atgttgatttgacggaaatacaagaattcactatggtgatgaaaaatcca |
2310626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 2303790 - 2303842
Alignment:
| Q |
47 |
tgctccatttagaatactttgttgctaatttggttttgaactttgagtggaag |
99 |
Q |
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| T |
2303790 |
tgctccatttagaatattttgtggctaatttggtttggaatttcgattggaag |
2303842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 15176327 - 15176287
Alignment:
| Q |
58 |
gaatactttgttgctaatttggttttgaactttgagtggaa |
98 |
Q |
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| T |
15176327 |
gaatactttgttgccaattttgttttgaattttgagtggaa |
15176287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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