View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12741_high_5 (Length: 324)
Name: NF12741_high_5
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12741_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 37224317 - 37224629
Alignment:
| Q |
1 |
ttgtgaagaacttgaaggccactaactccattctggatgaggaggttcaagaggccatgatcggaatgtgggggcattcccattgcaagctcaggttgag |
100 |
Q |
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| T |
37224317 |
ttgtgaagaacttgaaggccactaactccattctggatgaggaggttcaagaggccatgatcggaatgtgggggcattcccattgcaagatcaggttgag |
37224416 |
T |
|
| Q |
101 |
gacaaggaggataaagatttgctgccaacatttgtaaaccagaatctagattcattgttttgtctatatagttgacttccaaacccaaactttctgatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37224417 |
gacaaggaggataaagatttgctgccaacatttgtaaaccagaatctagattcattgttttgtctatatagttgacttccaaacccaaactttctgatat |
37224516 |
T |
|
| Q |
201 |
tcctttgagaagttctctacctaatttccatgtttttctgctgtactctgcggatgtttccctacaaccgcacnnnnnnnnggataatttagaatacaaa |
300 |
Q |
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| T |
37224517 |
tcctttgagaagttctctacctaatttccatgtttttctgctgtactctgcggatgtttccctacaaccgcacaaaaaaaaggataatttagaatacaaa |
37224616 |
T |
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| Q |
301 |
ccatcatgtccta |
313 |
Q |
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||||||||||||| |
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| T |
37224617 |
ccatcatgtccta |
37224629 |
T |
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