View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12741_low_10 (Length: 270)
Name: NF12741_low_10
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12741_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 6652128 - 6652214
Alignment:
| Q |
121 |
ggggaaaggtaaccaaaaagaagagcgaatagagaaaagctgccaaacataacaaataacagggagataatcaatcaaacagaagaa |
207 |
Q |
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| T |
6652128 |
ggggaaaggcaaccaaaaagaagagcgaatagagaaaagcaaccaaacataacaattaacagggagataatcaatcaaacagaagaa |
6652214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 6732528 - 6732614
Alignment:
| Q |
121 |
ggggaaaggtaaccaaaaagaagagcgaatagagaaaagctgccaaacataacaaataacagggagataatcaatcaaacagaagaa |
207 |
Q |
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| T |
6732528 |
ggggaaaggcaaccaaaaagaagagcgaatagagaaaagcaaccaaacataacaattaacagtgagataatcaatcaaacagaagaa |
6732614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 6652029 - 6652068
Alignment:
| Q |
16 |
caaaccaaatcagaccaagggaaaccaaaaatataaacta |
55 |
Q |
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| T |
6652029 |
caaaccaaatcaggccaatggaaaccaaaaatataaacta |
6652068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 6732429 - 6732468
Alignment:
| Q |
16 |
caaaccaaatcagaccaagggaaaccaaaaatataaacta |
55 |
Q |
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| T |
6732429 |
caaaccaaatcaggccaatggaaaccaaaaatataaacta |
6732468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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