View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12741_low_12 (Length: 264)
Name: NF12741_low_12
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12741_low_12 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 42394182 - 42394413
Alignment:
| Q |
17 |
tccgctcctaagctctccctctctccgtcctccatcgccgcaccccacatcatattagtaatcacgtttaacaccgtcaaaaacacttgctccccaacat |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42394182 |
tccgctcctaagctctccctctcaccgtcctccatcgccgcaccccacatcatattagtaatcacgttcaacaccgtcaaaaacacttgctccccaacac |
42394281 |
T |
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| Q |
117 |
tcaccgttgatccggcacagttgtgaatatactctaccattttccgaacctcaccacggcggagttcgtagactgaatcaagacttttattgctaagcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42394282 |
tcaccgttgatccggcacagttgtgaatatactctaccattttccgaacctcaccacggcggagttcgtagactgaatcaagacttttattgctaagcat |
42394381 |
T |
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| Q |
217 |
cttcaccacacaaactttcctcagcatccgcc |
248 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42394382 |
cttcaccacacaaactttcctcagcatccgcc |
42394413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 42378265 - 42378498
Alignment:
| Q |
15 |
actccgctcctaagctctccctctctccgtcctccatcgccgcaccccacatcatattagtaatcacgtttaacaccgtcaaaaacacttgctccccaac |
114 |
Q |
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||||||| ||||| |||||||||||| | | |||| | ||||||||||||||||||| |||||||| || |||||||| ||||| || ||||| ||||| |
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| T |
42378265 |
actccgcccctaaactctccctctcttctccttccacccccgcaccccacatcatattcgtaatcacattcaacaccgttaaaaaaacctgctcaccaac |
42378364 |
T |
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| Q |
115 |
attcaccgttgatccggcacagttgtgaatatactctaccattttccgaacctcaccacggcggagttcgtagactgaatcaagacttttattgctaagc |
214 |
Q |
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| T |
42378365 |
attcaccgttgaccctacccgatcatgaatatacccgaccgttttccgaacctcacctcgtcggagctcgtaaacggagtcaagagttgtgttactaagc |
42378464 |
T |
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| Q |
215 |
atcttcaccacacaaactttcctcagcatccgcc |
248 |
Q |
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|||||||| ||||| | ||| |||||||| |||| |
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| T |
42378465 |
atcttcacgacacagatttttctcagcatacgcc |
42378498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 224 - 300
Alignment:
| Q |
169 |
accacggcggagttcgtagactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatcc |
245 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
224 |
accacggcggagttcatacactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatcc |
300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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