View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12741_low_14 (Length: 241)

Name: NF12741_low_14
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12741_low_14
NF12741_low_14
[»] chr7 (6 HSPs)
chr7 (17-224)||(17601228-17601435)
chr7 (25-159)||(36222990-36223121)
chr7 (64-151)||(5796151-5796237)
chr7 (64-151)||(9765267-9765352)
chr7 (51-159)||(23107450-23107553)
chr7 (140-213)||(44018179-44018251)
[»] chr8 (6 HSPs)
chr8 (50-220)||(14627022-14627186)
chr8 (53-151)||(44007768-44007865)
chr8 (82-175)||(20262169-20262260)
chr8 (82-175)||(21048799-21048890)
chr8 (52-158)||(29613587-29613690)
chr8 (140-206)||(5827686-5827751)
[»] chr1 (6 HSPs)
chr1 (25-159)||(34065773-34065907)
chr1 (62-155)||(41159313-41159404)
chr1 (140-213)||(33897985-33898057)
chr1 (25-105)||(47643926-47644006)
chr1 (82-180)||(3088148-3088245)
chr1 (140-213)||(23441671-23441743)
[»] chr3 (9 HSPs)
chr3 (64-221)||(25491789-25491944)
chr3 (64-221)||(19868568-19868723)
chr3 (64-194)||(11270642-11270774)
chr3 (140-213)||(3305509-3305581)
chr3 (140-213)||(4250045-4250117)
chr3 (140-213)||(28327103-28327175)
chr3 (140-213)||(28330428-28330500)
chr3 (82-175)||(10963018-10963110)
chr3 (82-175)||(10966527-10966619)
[»] chr6 (4 HSPs)
chr6 (66-153)||(20527851-20527934)
chr6 (140-213)||(35027520-35027592)
chr6 (85-131)||(6856494-6856540)
chr6 (140-213)||(12746465-12746537)
[»] scaffold0273 (1 HSPs)
scaffold0273 (140-213)||(20072-20144)
[»] scaffold0083 (2 HSPs)
scaffold0083 (140-213)||(28981-29053)
scaffold0083 (140-213)||(52778-52850)
[»] scaffold0043 (1 HSPs)
scaffold0043 (140-213)||(13251-13323)
[»] chr4 (3 HSPs)
chr4 (140-213)||(13978793-13978865)
chr4 (140-213)||(19928563-19928635)
chr4 (140-213)||(56089701-56089773)
[»] chr2 (1 HSPs)
chr2 (140-213)||(40678159-40678231)
[»] chr5 (2 HSPs)
chr5 (140-213)||(9690422-9690494)
chr5 (140-213)||(26337642-26337714)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 17601228 - 17601435
Alignment:
Q  17 ggagagatgagctacgacatgcgaaacaactgcgatgattagaaggaaaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttc 116  Q
    ||||||| |||||||  ||||| |||||||   ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17601228 ggagagaagagctacagcatgccaaacaacaaggatgattagaaagaaatttcaggagcaacatcggcaacaaggaaactcttgggtttattttcttttc 17601327  T
Q  117 ttatgttgtttatttctatgaacatgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtttaa 216  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| |    
T  17601328 ttatgttgtttatttctatgaacatgagtagctaatttgtttgattgattgagccatgagatgaatctattgtaatatgtgaacaatgtaacttgtttga 17601427  T
Q  217 actctttt 224  Q
    ||||||||    
T  17601428 actctttt 17601435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 36223121 - 36222990
Alignment:
Q  25 gagctacgacatgcgaaacaactgcgatgattagaaggaaaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttg 124  Q
    |||||||| ||||| |||||||  | |||||| |||  |||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||   ||    
T  36223121 gagctacggcatgc-aaacaacaacaatgatttgaaacaaaattcaggagcaacgtcggcaacaatgaaattcttgggtttattttcttttctta---tg 36223026  T
Q  125 tttatttctatgaacatgagtagct-aatttctttg 159  Q
    ||||||| ||||||||||||||||| ||||||||||    
T  36223025 tttatttttatgaacatgagtagctaaatttctttg 36222990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 5796151 - 5796237
Alignment:
Q  64 aaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttgtttatttctatgaacatgagtagctaa 151  Q
    ||||| ||||||||||||| |||||| |||| | ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  5796151 aaattaaggagcaacatcgacaacaatgaaatttttgagtttatttt-ttttcttatgttgtttatttctaagaacatgagtagctaa 5796237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 9765267 - 9765352
Alignment:
Q  64 aaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttgtttatttctatgaacatgagtagctaa 151  Q
    ||||||||||||||| |||||||| | |||||||| || ||| |||||||||  ||||||||||||||||||||| ||||||||||||    
T  9765267 aaattcaggagcaacgtcggcaactaggaaactctcggctttgttttctttt--tatgttgtttatttctatgaatatgagtagctaa 9765352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 23107450 - 23107553
Alignment:
Q  51 atgattagaaggaaaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttgtttatttctatgaacatgagtagct- 149  Q
    |||||| ||| ||||||||||||||||| |||||||||| |||| ||||||||||||||| ||       ||||||||||| |||||||||||||||||     
T  23107450 atgatttgaaagaaaattcaggagcaacgtcggcaacaatgaaattcttgggtttattttatt------agttgtttatttttatgaacatgagtagcta 23107543  T
Q  150 aatttctttg 159  Q
    ||||||||||    
T  23107544 aatttctttg 23107553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 44018251 - 44018179
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    |||||||||| |  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  44018251 atgagtagctgaactcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 44018179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 14627022 - 14627186
Alignment:
Q  50 gatgattagaaggaaaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttgtttatttctatgaacatgagtagct 149  Q
    |||||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  14627022 gatgataagaaagaaaattcaggaacaacatcgccaacaacgaaactcttgggtttattttcttttcttatgttgtttgtttctacgaacatgagtagct 14627121  T
Q  150 aatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtttaaactc 220  Q
    ||||||||   |||||||||||||   |||| |||||||||||||||||||||||||| |||||| |||||    
T  14627122 aatttctt---ttgattgagccat---atgaatctattgtaatctgtgaaccatgtaatttgtttgaactc 14627186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 44007768 - 44007865
Alignment:
Q  53 gattagaaggaaaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttgtttatttctatg-aacatgagtagctaa 151  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||| || ||  ||||||||  ||||||||||||||| |||| |||||||||||||||    
T  44007768 gattagaaagaaaattcaggagcaacattggcaactacgaaactctcggtttcgttttcttt--ttatgttgtttatttttatgaaacatgagtagctaa 44007865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 20262169 - 20262260
Alignment:
Q  82 ggcaacaacgaaactcttgggtttattttcttttcttatgttgttt-atttctatgaacatgagtagctaatttctttgattgattgagccatga 175  Q
    |||||||||| |||||| || ||||||||||||||||  ||||||| |||| |||||||||||||||||||  |||| |||||||||||||||||    
T  20262169 ggcaacaacggaactctcgg-tttattttcttttctt--gttgttttatttttatgaacatgagtagctaagctcttggattgattgagccatga 20262260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 21048799 - 21048890
Alignment:
Q  82 ggcaacaacgaaactcttgggtttattttcttttcttatgttgttt-atttctatgaacatgagtagctaatttctttgattgattgagccatga 175  Q
    |||||||||| |||||| || ||||||||||||||||  ||||||| |||| |||||||||||||||||||  |||| |||||||||||||||||    
T  21048799 ggcaacaacggaactctcgg-tttattttcttttctt--gttgttttatttttatgaacatgagtagctaagctcttggattgattgagccatga 21048890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 29613690 - 29613587
Alignment:
Q  52 tgattagaaggaaaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttgtttatttctatgaacatgagtagctaa 151  Q
    ||||||||| ||||||||| || |||| |||||||||||  || | ||   ||| ||| ||||||| |||||||||||||||||||||||||||| ||||    
T  29613690 tgattagaaagaaaattcaagaacaacgtcggcaacaac--aatttttttttttttttccttttct-atgttgtttatttctatgaacatgagtaactaa 29613594  T
Q  152 tttcttt 158  Q
     ||||||    
T  29613593 attcttt 29613587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 5827686 - 5827751
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgta 206  Q
    |||||| |||||  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||    
T  5827686 atgagtggctaaactcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgta 5827751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 34065773 - 34065907
Alignment:
Q  25 gagctacgacatgcgaaacaactgcgatgattagaaggaaaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttg 124  Q
    |||||||| ||||| |||||||  | |||||| ||| ||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  34065773 gagctacggcatgc-aaacaacaacaatgatttgaaagaaaattcaggagcaacgtcggcaacaatgaaattcttgggtttattttcttttcttatgttg 34065871  T
Q  125 tttatttctatgaacatgagtagct-aatttctttg 159  Q
    ||||||| ||||||||||||||||| ||||||||||    
T  34065872 tttatttttatgaacatgagtagctaaatttctttg 34065907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 41159404 - 41159313
Alignment:
Q  62 gaaaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttgtttatttctatgaacatgagtagctaatttc 155  Q
    ||||||| |||| |||| ||| ||||||||||||||| || ||||||||||||  ||||||||||||||| ||||||||||| ||| |||||||    
T  41159404 gaaaatttaggaccaacgtcgacaacaacgaaactctcggttttattttcttt--ttatgttgtttatttttatgaacatgaatagttaatttc 41159313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 33897985 - 33898057
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    |||||||||| |  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  33897985 atgagtagctgaactcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 33898057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 47644006 - 47643926
Alignment:
Q  25 gagctacgacatgcgaaacaactgcgatgattagaaggaaaattcaggagcaacatcggcaacaacgaaactcttgggttt 105  Q
    |||||||||||||  |||||||  | |||||| ||| ||||||||||||| ||||| | |||||||  |||||||||||||    
T  47644006 gagctacgacatgtcaaacaacaacaatgatttgaatgaaaattcaggagtaacatggacaacaacataactcttgggttt 47643926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 3088245 - 3088148
Alignment:
Q  82 ggcaacaacgaaactcttgggtttattttcttttcttatgttgttt-atttctatgaacatgagtagctaatttctttgattgattgagccatgagatga 180  Q
    |||||||||| |||||| || |||||||||||||||  |||||||| |||| |||||| |||||||| |||  | || |||||||| |||||||||||||    
T  3088245 ggcaacaacggaactctcgg-tttattttcttttctc-tgttgttttatttttatgaatatgagtagttaagcttttagattgattaagccatgagatga 3088148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 23441743 - 23441671
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    |||||||||| |  |||| |||||||| |||||||| |||| ||| |||| ||||||||||||||||| |||||    
T  23441743 atgagtagctgaactcttagattgattaagccatgatatgaatct-ttgtgatctgtgaaccatgtaatttgtt 23441671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 25491789 - 25491944
Alignment:
Q  64 aaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttgtttatttctatgaacatgagtagctaatttctttgattg 163  Q
    ||||||||||||||| || ||||| |||||||||| || ||| |||||||||  ||||||||||| ||||||||||||||||||||||  |||| ||||     
T  25491789 aaattcaggagcaacgtccgcaactacgaaactctcggttttgttttctttt--tatgttgtttaattctatgaacatgagtagctaagctcttagatta 25491886  T
Q  164 attgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtttaaactct 221  Q
    || |||||||||||||| |||||||| |||| |||||||||||| |||||| ||||||    
T  25491887 atcgagccatgagatgaatctattgtgatctatgaaccatgtaatttgtttgaactct 25491944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 19868568 - 19868723
Alignment:
Q  64 aaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttgtttatttctatgaacatgagtagctaatttctttgattg 163  Q
    ||||||| ||||||| |||||||| | |||||||| || ||| |||||||||  ||||||||||||||||||||||||||||||||||  || | ||||     
T  19868568 aaattcaagagcaacgtcggcaactatgaaactctcggttttgttttctttt--tatgttgtttatttctatgaacatgagtagctaagctcctagatta 19868665  T
Q  164 attgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtttaaactct 221  Q
    || ||| |||||||||| |||||||| |||| |||||||||||| |||||||||||||    
T  19868666 atcgagtcatgagatgaatctattgtgatctatgaaccatgtaatttgtttaaactct 19868723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 11270642 - 11270774
Alignment:
Q  64 aaattcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttc---ttatgttgtttatttctatgaacatgagtagctaatttctttga 160  Q
    |||||||||||||| ||||||||| |||||||||| || ||| ||| ||||||   |||||||||||||||||||||||||||| || |||  | || ||    
T  11270642 aaattcaggagcaagatcggcaactacgaaactctcggttttgtttccttttctttttatgttgtttatttctatgaacatgag-agttaagcttttaga 11270740  T
Q  161 ttgattgagccatgagatgagtctattgtaatct 194  Q
    ||||||||||||||| |||||||| |||||||||    
T  11270741 ttgattgagccatgaaatgagtcttttgtaatct 11270774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 3305509 - 3305581
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    |||||||||| |  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  3305509 atgagtagctgaactcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 3305581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 4250045 - 4250117
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  |||| |||||||| || |||||||||| ||| |||| ||||||||||||||||| |||||    
T  4250045 atgagtagctaaactcttagattgattaagtcatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 4250117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 28327103 - 28327175
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    |||||||||| |  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  28327103 atgagtagctgaactcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 28327175  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 28330428 - 28330500
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    |||||||||| |  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  28330428 atgagtagctgaactcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 28330500  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 10963018 - 10963110
Alignment:
Q  82 ggcaacaacgaaactcttgggtttattttcttttcttatgttgttt-atttctatgaacatgagtagctaatttctttgattgattgagccatga 175  Q
    ||||||||||||||||| || |||||||||||||||  |||||||| | || |||||| ||||||||||||  | || | |||||||||||||||    
T  10963018 ggcaacaacgaaactctcgg-tttattttcttttctc-tgttgttttaattttatgaatatgagtagctaaggttttagtttgattgagccatga 10963110  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 10966527 - 10966619
Alignment:
Q  82 ggcaacaacgaaactcttgggtttattttcttttcttatgttgttt-atttctatgaacatgagtagctaatttctttgattgattgagccatga 175  Q
    ||||||||||||||||| || |||||||||||||||  |||||||| | || |||||| ||||||||||||  | || | |||||||||||||||    
T  10966527 ggcaacaacgaaactctcgg-tttattttcttttctc-tgttgttttaattttatgaatatgagtagctaaggttttagtttgattgagccatga 10966619  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 20527934 - 20527851
Alignment:
Q  66 attcaggagcaacatcggcaacaacgaaactcttgggtttattttcttttcttatgttgtttatttctatgaacatgagtagctaatt 153  Q
    ||||||||||||| |||||||| ||||||||||  | ||| |||| |||    |||||||||||||||||||||||||||||| ||||    
T  20527934 attcaggagcaacgtcggcaactacgaaactctcagttttgttttattt----atgttgtttatttctatgaacatgagtagcaaatt 20527851  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 35027592 - 35027520
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  35027592 atgagtagctaagctcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 35027520  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 6856494 - 6856540
Alignment:
Q  85 aacaacgaaactcttgggtttattttcttttcttatgttgtttattt 131  Q
    |||||| |||||||||| ||||||||||||| |||||||| ||||||    
T  6856494 aacaaccaaactcttggatttattttctttttttatgttgcttattt 6856540  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 12746465 - 12746537
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  ||||  ||||||| ||||||||||||  ||| |||| ||||||||||||||||| |||||    
T  12746465 atgagtagctaaactcttaaattgattaagccatgagatggatct-ttgtgatctgtgaaccatgtaatttgtt 12746537  T

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Target: scaffold0273 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 20144 - 20072
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  20144 atgagtagctaaactcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 20072  T

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Target: scaffold0083 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 28981 - 29053
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  28981 atgagtagctaaactcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 29053  T

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Target: scaffold0083; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 52778 - 52850
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  |||| |||||||| || |||||||||  ||| |||| ||||||||||||||||| |||||    
T  52778 atgagtagctaaactcttagattgattaagacatgagatgtatct-ttgtgatctgtgaaccatgtaatttgtt 52850  T

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Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 13251 - 13323
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  13251 atgagtagctaaactcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 13323  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 13978793 - 13978865
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  |||| |||||||| | ||||||||||| ||| |||| ||||||||||||||||| |||||    
T  13978793 atgagtagctaaactcttagattgattaaaccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 13978865  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 19928563 - 19928635
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  |||| |||||||| ||  ||||||||| ||| |||| ||||||||||||||||| |||||    
T  19928563 atgagtagctaaactcttagattgattaagtaatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 19928635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 56089773 - 56089701
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  |||| |||||||| |||||||| |||| ||| |||| ||||||||| ||||||| |||||    
T  56089773 atgagtagctaaactcttagattgattaagccatgaaatgaatct-ttgtgatctgtgaatcatgtaatttgtt 56089701  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 40678231 - 40678159
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    |||||||||| |  |||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  40678231 atgagtagctgaactcttagattgattaagccatgagatgaatct-ttgtgatctgtgaaccatgtaatttgtt 40678159  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 9690422 - 9690494
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  | || |||||||||||||||||||||| ||| |||| || |||||||||| ||| |||||    
T  9690422 atgagtagctaaactattagattgattgagccatgagatgaatct-ttgtgatttgtgaaccatataatttgtt 9690494  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 26337642 - 26337714
Alignment:
Q  140 atgagtagctaatttctttgattgattgagccatgagatgagtctattgtaatctgtgaaccatgtaacttgtt 213  Q
    ||||||||||||  |||| |||||||| |||||||||| |||||| |||| || ||| |||||||||| |||||    
T  26337642 atgagtagctaaactcttagattgattaagccatgagacgagtct-ttgtgatttgtcaaccatgtaatttgtt 26337714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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