View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12741_low_16 (Length: 237)
Name: NF12741_low_16
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12741_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 36206749 - 36206543
Alignment:
| Q |
13 |
gcaaagggcaatgaaagatgcaaattcaagtctgatctaaaaattattaggaaataagttatagcgaattaagaagagaatagagatggcagaactttat |
112 |
Q |
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| T |
36206749 |
gcaatgggcaatcaaagatgcaaatttgagtctgatctaaaaattattaggaaattagttatagcgaattaagaagagaatagagatggcagaactttat |
36206650 |
T |
|
| Q |
113 |
gtgaatcaggcaaaggaatattcaaatgcaaggccaagttatccggcacaactcttccaattcatagcttctaaaactccctctcacaacctcgcttggg |
212 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36206649 |
gtgaatcaggcaagggaatattcaaatgcaaggccaagttatccaccacaactcttccaattcatagcttctaaaactccctctcacaacctcgtttggg |
36206550 |
T |
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| Q |
213 |
atgttgc |
219 |
Q |
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| T |
36206549 |
acgttgc |
36206543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 35401696 - 35401824
Alignment:
| Q |
92 |
atagagatggcagaactttatgtgaatcaggcaaaggaatattcaaatgcaaggccaagttatccggcacaactcttccaattcatagcttctaaaactc |
191 |
Q |
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|||||||||||||| |||| ||||||||||| ||||||||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
35401696 |
atagagatggcagagctttttgtgaatcagggaaaggaatacgcagatgcaaggccaagttatccaccacaactctttcaattcatagcttctaaaactc |
35401795 |
T |
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| Q |
192 |
cctctcacaacctcgcttgggatgttgct |
220 |
Q |
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| T |
35401796 |
cctctcacaaccttgtttgggatgttgct |
35401824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 220
Target Start/End: Original strand, 35398974 - 35399096
Alignment:
| Q |
98 |
atggcagaactttatgtgaatcaggcaaaggaatattcaaatgcaaggccaagttatccggcacaactcttccaattcatagcttctaaaactccctctc |
197 |
Q |
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|||||||| |||| ||||||||||| ||||||||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
35398974 |
atggcagagctttttgtgaatcagggaaaggaatacgcagatgcaaggccaagttatccaccacaactctttcaattcatagcttctaaaactccctctc |
35399073 |
T |
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| Q |
198 |
acaacctcgcttgggatgttgct |
220 |
Q |
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||||||| | ||||||||||||| |
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| T |
35399074 |
acaaccttgtttgggatgttgct |
35399096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 36210450 - 36210316
Alignment:
| Q |
79 |
aattaagaagagaatagagatggcagaactttatgtgaatcaggcaaaggaatattcaaatgcaaggccaagttatccggcacaactcttccaattcata |
178 |
Q |
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||||||| |||||||||| |||||||| | || || ||| |||| |||||||||| || || |||||||||||||||| |||||||||||||||||||| |
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| T |
36210450 |
aattaaggagagaatagaaatggcagagcattttgcgaaacagggaaaggaatatgcagattcaaggccaagttatccaccacaactcttccaattcata |
36210351 |
T |
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| Q |
179 |
gcttctaaaactccctctcacaacctcgcttggga |
213 |
Q |
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||||||||||||||||||||| |||| |||||||| |
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| T |
36210350 |
gcttctaaaactccctctcacgaccttgcttggga |
36210316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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