View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12741_low_17 (Length: 227)

Name: NF12741_low_17
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12741_low_17
NF12741_low_17
[»] chr5 (3 HSPs)
chr5 (24-132)||(21156799-21156908)
chr5 (164-211)||(21156720-21156767)
chr5 (23-67)||(39481161-39481205)
[»] chr4 (2 HSPs)
chr4 (24-96)||(4117531-4117603)
chr4 (160-211)||(4117431-4117482)
[»] chr1 (1 HSPs)
chr1 (21-85)||(47933927-47933991)
[»] chr8 (1 HSPs)
chr8 (26-117)||(30849743-30849834)
[»] scaffold0317 (1 HSPs)
scaffold0317 (30-83)||(19233-19286)


Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 21156908 - 21156799
Alignment:
Q  24 ggtggtggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagatctgagagcgacgtgctgg-tggtggcggtggtgtgatttgtgtac 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  21156908 ggtggtggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagatctgagtgcgaggtgctggatggtggcggtggtgtgatttgtgtac 21156809  T
Q  123 tgttaaaagt 132  Q
    ||||||||||    
T  21156808 tgttaaaagt 21156799  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 21156767 - 21156720
Alignment:
Q  164 aagtgaaatacttttgctctgattggcattctaagaaaatgtgaaact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21156767 aagtgaaatacttttgctctgattggcattctaagaaaatgtgaaact 21156720  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 39481161 - 39481205
Alignment:
Q  23 cggtggtggtgacggtgagatgatatggtgatagatgacgttaat 67  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  39481161 cggtggtggtgacggtgagatgagatggtgatagatgacgttaat 39481205  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 4117603 - 4117531
Alignment:
Q  24 ggtggtggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagatctgagagcgacgtgctgg 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  4117603 ggtggtggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagatttgagagcgaggtgctgg 4117531  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 4117482 - 4117431
Alignment:
Q  160 tcgtaagtgaaatacttttgctctgattggcattctaagaaaatgtgaaact 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117482 tcgtaagtgaaatacttttgctctgattggcattctaagaaaatgtgaaact 4117431  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 47933927 - 47933991
Alignment:
Q  21 gacggtggtggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagatctgagag 85  Q
    |||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||    
T  47933927 gacgatggtggtgacggtgagatgagatggtaatagacgacgttaatggtgttcagatctgagag 47933991  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 30849834 - 30849743
Alignment:
Q  26 tggtggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagatctgagagcgacgtgctggtggtggcggtggtgtgatttg 117  Q
    |||||||||||||||||||| ||||| |||||||| |||||||| |||| |||||||||| || ||  |||| ||  |||||||||||||||    
T  30849834 tggtggtgacggtgagatgagatggtaatagatgatgttaatggtgttctgatctgagagtgaggttgtggtagtcacggtggtgtgatttg 30849743  T

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Target: scaffold0317 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 19286 - 19233
Alignment:
Q  30 ggtgacggtgagatgatatggtgatagatgacgttaatggcgttcagatctgag 83  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  19286 ggtgacggtgagatgagatggtgatagatgacgttaatggtgttcagatttgag 19233  T

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