View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12741_low_2 (Length: 543)
Name: NF12741_low_2
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12741_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Complemental strand, 39480655 - 39480137
Alignment:
| Q |
17 |
atcagagacggtgtggacgttctatccttgtctctaggcggtttcccggtgccactatatgatgatagtattgccattggaagctttcgagcaatggaga |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39480655 |
atcagagatggtgtggacgttctatccttgtctctaggtggtttcccggtgccactatatgatgatagtattgccattggaagctttcgagcaatggaga |
39480556 |
T |
|
| Q |
117 |
aagggatttcagttatatgtgcggcaggaaacaatggcccaatggcgatgtctgttgccaatgatgctccttggattgcaactattggagcaagcacact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39480555 |
aagggatttcagttatatgtgcggcaggaaacaatggcccaatggcgatgtctgttgccaatgatgctccttggattgcaactattggagcaagcacact |
39480456 |
T |
|
| Q |
217 |
tgacagaaaattcccagctatagttcgcatgggtaatggacaagttctctatggagaatccatgtatccggtgaacagaatagcaagcaatagcaaagaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39480455 |
tgacagaaaattcccagctatagttcgcatgggtaatggacaagttctctatggagaatccatgtatccggtgaacagaatagcaagcaatagcaaagaa |
39480356 |
T |
|
| Q |
317 |
cttgagctggtttacctctctggtggggatagtgagagtcaattttgcctcaaagggtctcttccaaaggacaaagttcaaggaaaaatggtggtatgtg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39480355 |
cttgagctggtttacctctctggtggggatagtgagagtcaattttgcctcaaagggtctcttccaaaggacaaagttcaaggaaaaatggtggtatgtg |
39480256 |
T |
|
| Q |
417 |
atcgaggtgtcaacggaagatcagaaaagggtcaagctgtgaaggaagcaggcggtgctgctatgatcttggcaaacacagagctaaacttggaagaaga |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39480255 |
atcgaggtgtcaacggaagatcagaaaagggtcaagctgtgaaggaagcaggtggtgctgctatgatcttggcaaacacagagctaaacttggaagaaga |
39480156 |
T |
|
| Q |
517 |
ttcggttgatgtccatctc |
535 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
39480155 |
ttcggttgatgttcatctc |
39480137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 244 - 528
Target Start/End: Original strand, 39126999 - 39127281
Alignment:
| Q |
244 |
catgggtaatggacaagttctctatggagaatccatgtatccggtgaacagaatagcaagcaatagcaaagaacttgagctggtttacctctctggtggg |
343 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
39126999 |
catggataatggacaagttctctatggagaatccatgtatcttgtaaacattatagcaagcaatggcaaagaacttgagccggtttacctaagtggtgga |
39127098 |
T |
|
| Q |
344 |
gatagtgagagtcaattttgcctcaaagggtctcttccaaaggacaaagttcaaggaaaaatggtggtatgtgatcgaggtgtcaacggaagatcagaaa |
443 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||| |||| ||||||| |||| ||| |||| ||| |||||||||| ||||||||||||| |
|
|
| T |
39127099 |
gatagtgagagtcaattt-gcctcaatac-tctcttccaaaggtcaaatttcaaggcaaaacggtcatatgcgattgaggtgtcaatggaagatcagaaa |
39127196 |
T |
|
| Q |
444 |
agggtcaagctgtgaaggaagcaggcggtgctgctatgatcttggcaaacacagagctaaacttggaagaagattcggttgatgt |
528 |
Q |
| |
|
||||||||| |||||| |||||| | || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
39127197 |
agggtcaagttgtgaatgaagcaagtagtactgctatgatcttggcaaacacagagcttaacttggaagaagattcaattgatgt |
39127281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University