View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12741_low_4 (Length: 427)

Name: NF12741_low_4
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12741_low_4
NF12741_low_4
[»] chr7 (1 HSPs)
chr7 (296-416)||(43103836-43103956)
[»] chr5 (3 HSPs)
chr5 (296-416)||(27364598-27364717)
chr5 (296-333)||(27365640-27365677)
chr5 (296-333)||(22778251-22778288)
[»] chr4 (1 HSPs)
chr4 (296-410)||(1866168-1866282)
[»] chr1 (5 HSPs)
chr1 (296-410)||(10920063-10920177)
chr1 (296-410)||(23818199-23818313)
chr1 (303-389)||(16145326-16145412)
chr1 (294-332)||(28762445-28762483)
chr1 (296-333)||(4929814-4929851)
[»] chr6 (2 HSPs)
chr6 (354-416)||(2127735-2127797)
chr6 (296-333)||(1859798-1859835)
[»] chr2 (2 HSPs)
chr2 (296-344)||(3322916-3322964)
chr2 (296-333)||(13913466-13913503)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 296 - 416
Target Start/End: Original strand, 43103836 - 43103956
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 395  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  43103836 tatcaagtgagaggacattttataatgagagatgagagcattaaattaggaccctaggatcaaattgaaaggtggagatgatatttcacgtaatgtggtg 43103935  T
Q  396 tatgactacctgattgccttt 416  Q
    |||||||||||||||||||||    
T  43103936 tatgactacctgattgccttt 43103956  T

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Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 296 - 416
Target Start/End: Original strand, 27364598 - 27364717
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 395  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  27364598 tatcaagtgagagtacattttataatgagagatgagagcattaaattaggaccctagg-tcaaattgaaaggtggagatgatatttcacttaatgtggtg 27364696  T
Q  396 tatgactacctgattgccttt 416  Q
    |||||||||||||||||||||    
T  27364697 tatgactacctgattgccttt 27364717  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 27365677 - 27365640
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagag 333  Q
    |||||||||||||||||||||||||||| |||||||||    
T  27365677 tatcaagtgagaggacattttataatgagagatgagag 27365640  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 22778251 - 22778288
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagag 333  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  22778251 tatcaagtgagaggacatcttataatgagagatgagag 22778288  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 410
Target Start/End: Complemental strand, 1866282 - 1866168
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 395  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  1866282 tatcaagtgagaggacattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 1866183  T
Q  396 tatgactacctgatt 410  Q
    | |||||||||||||    
T  1866182 tgtgactacctgatt 1866168  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 410
Target Start/End: Complemental strand, 10920177 - 10920063
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 395  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  10920177 tatcaagtgagaggacattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 10920078  T
Q  396 tatgactacctgatt 410  Q
    | |||||||||||||    
T  10920077 tgtgactacctgatt 10920063  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 296 - 410
Target Start/End: Complemental strand, 23818313 - 23818199
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 395  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  23818313 tatcaagtgagaggatattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 23818214  T
Q  396 tatgactacctgatt 410  Q
    | |||||||||||||    
T  23818213 tgtgactacctgatt 23818199  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 16145326 - 16145412
Alignment:
Q  303 tgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaat 389  Q
    ||||||||  ||||||||| | ||||||||||||||| |||| |||||||||| ||  | || ||||||||||||||||||||||||    
T  16145326 tgagaggaggttttataataagagatgagagcattaagttagcaccctaagattaatctgaatggtggagatgatatttcacttaat 16145412  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 28762445 - 28762483
Alignment:
Q  294 tctatcaagtgagaggacattttataatgaaagatgaga 332  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  28762445 tctatcaagtgagaggacattttagaatgagagatgaga 28762483  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 4929814 - 4929851
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagag 333  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  4929814 tatcaagtgagaggacatcttataatgagagatgagag 4929851  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 2127797 - 2127735
Alignment:
Q  354 atcaaattaaaaggtggagatgatatttcacttaatgtggtgtatgactacctgattgccttt 416  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2127797 atcaaattgaaatgtgaagatgatatttcacttaatgtggtgtatgactacctgattgccttt 2127735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 1859835 - 1859798
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagag 333  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  1859835 tatcaagtgagaggacattttaaaatgagagatgagag 1859798  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 3322916 - 3322964
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagagcattaaattag 344  Q
    |||||||||||||||||||||| ||||| |||||||||  |||||||||    
T  3322916 tatcaagtgagaggacattttaaaatgagagatgagagagttaaattag 3322964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 13913503 - 13913466
Alignment:
Q  296 tatcaagtgagaggacattttataatgaaagatgagag 333  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  13913503 tatcaagtgagaggacatcttataatgagagatgagag 13913466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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