View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12741_low_6 (Length: 349)
Name: NF12741_low_6
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12741_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 2102366 - 2102703
Alignment:
| Q |
1 |
caattataaaatccaatgttttagctaacgccttcatagaagtcaccattaatttagatnnnnnnncagaagcacatgtcattggtattagtattcacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2102366 |
caattataaaatccaatgttttagctaacgccttcatagaagtcaccattaatttagataaaaaaacagaagcacatgtcattggtattagtattcacct |
2102465 |
T |
|
| Q |
101 |
catggtttgaagaaaatgctatggtatagatggttcatgtaatacttaccctcatctcttcttgattagatgaaacaacaaattggtctgcaccaagaaa |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102466 |
catggtttgaagaaaatgctatgatatagatggttcatgtaatacttgccctcatctcttcttgattagatgaaacaacaaattggtctgcaccaagaaa |
2102565 |
T |
|
| Q |
201 |
gctcagcgcctcctctttctttgacatactagtgctgaaaaccgttacacgcaaaccaaatgccttcccaaattttactgccatatgaccgaggccacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102566 |
gctcagcgcctcctctttctttgacatactagtgctgaaaaccgttacacgcaaaccaaatgccttcccaaattttactgccatatgaccgaggccacca |
2102665 |
T |
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| Q |
301 |
agaccaaccactccaagagacttaccaggttgattcat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2102666 |
agaccaaccactccaagagacttaccaggttgattcat |
2102703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 90 - 338
Target Start/End: Original strand, 2096243 - 2096491
Alignment:
| Q |
90 |
agtattcacctcatggtttgaagaaaatgctatggtatagatggttcatgtaatacttaccctcatctcttcttgattagatgaaacaacaaattggtct |
189 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2096243 |
agtattctcttcatggtttgaagaaaatgctatggtatagatggttcatataatacataccctcatatcttcttgattagatgaaacaacaaattggtct |
2096342 |
T |
|
| Q |
190 |
gcaccaagaaagctcagcgcctcctctttctttgacatactagtgctgaaaaccgttacacgcaaaccaaatgccttcccaaattttactgccatatgac |
289 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2096343 |
gcaccaagaaggctcagcgcctcctctttctttgacatgctagtgctgaaaaccgttacacgcaaaccaaatgccttcccaaattttaccgccatatgac |
2096442 |
T |
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| Q |
290 |
cgaggccaccaagaccaaccactccaagagacttaccaggttgattcat |
338 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
2096443 |
cgaggccaccaagaccaaccactccaagagacttgccgggttgattcat |
2096491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2095936 - 2095994
Alignment:
| Q |
1 |
caattataaaatccaatgttttagctaacgccttcatagaagtcaccattaatttagat |
59 |
Q |
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|||||||||||||||||| |||||| ||||||| ||||||||||||||| | ||||||| |
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| T |
2095936 |
caattataaaatccaatgatttagccaacgcctgcatagaagtcaccatcagtttagat |
2095994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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