View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12741_low_8 (Length: 320)
Name: NF12741_low_8
Description: NF12741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12741_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 2102109 - 2102402
Alignment:
| Q |
17 |
accacctgcagcacttccggcaacagttcttgatcctgcaaacagatgatgaatgaaggatattatttctggttccagcagtacaaagaatgagttgtta |
116 |
Q |
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| T |
2102109 |
accacctgcagcacttccggcaacagttcttgatcctgcaaacagatgatgaatgaaggatattatttctggttccagcagtacaaagaatgagttgtta |
2102208 |
T |
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| Q |
117 |
ttccaacaaaacttctatacttcaaatgcaacattacctaaattaaggcttgcagggctgaatttgacttcacttgggaacccaactaa-gccagaacac |
215 |
Q |
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| T |
2102209 |
ttccaacaaaacttctatacttcaaatgcaacattacctaaattaaggcttgcagggctgaatttgacttcacttgggaacccaactaaggccagaacac |
2102308 |
T |
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| Q |
216 |
caaatatcttcagaagtgacatgtaaggatcaaatgggtgatcacccgaagccgtgtcaattataaaatccaatgttttagttaacgccttcat |
309 |
Q |
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| T |
2102309 |
cagatatcttcagaagtgacatgtaaggatcaaatgggtgatcacccgaagccgtgtcaattataaaatccaatgttttagctaacgccttcat |
2102402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 2095682 - 2095968
Alignment:
| Q |
17 |
accacctgcagcacttccggcaacagttcttgatcctgcaaacagatgatgaatgaaggatattatttctggttccagcagtacaaagaatgagttgtta |
116 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
2095682 |
accacctgtaacacttccggcaacagttcttgatcctgcaaacagatga---atggaggatattatttctggttccagcggtacaaagaacgagttgtta |
2095778 |
T |
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| Q |
117 |
ttccaacaaaacttctatacttcaaatgcaacattacctaaattaaggcttgcagggctgaatttgacttcacttgggaacccaactaag-ccagaacac |
215 |
Q |
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| T |
2095779 |
ttacaacaaaacttctatacttcaaatgcaacattacctaaattaaggcttgcagggctgaatttgacttcacttgggaacccaactaagaccagaacac |
2095878 |
T |
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| Q |
216 |
caaatatcttcagaagtgacatgtaaggatcaaatgggtgatcacccgaagccgtgtcaattataaaatccaatgttttagttaacgcct |
305 |
Q |
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| T |
2095879 |
cagatatcttcagaagtgacatgtaaggatcaaacaggtgatcacccgatgccgtgtcaattataaaatccaatgatttagccaacgcct |
2095968 |
T |
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