View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12742_high_14 (Length: 317)

Name: NF12742_high_14
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12742_high_14
NF12742_high_14
[»] chr1 (1 HSPs)
chr1 (11-298)||(46349789-46350076)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 46350076 - 46349789
Alignment:
Q  11 agatgaaagagatgataagaaaaggagggctgagtatattcttagacagtctatggagaatcgacaagaactcactcttttgtaggttctgaggctgaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46350076 agatgaaagagatgataagaaaaggagggctgagtatattcttagacagtctatggagaatcgacaagaactcactcttttgtaggttctgaggctgaag 46349977  T
Q  111 ttacgggctttccgatgttctggtgaggattttgtgactgacatgtagaattcatagtagtgactatattttagagctgttaaatttgattccttttttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46349976 ttacgggctttccgatgttctggtgaggattttgtgactgacatgtagaattcatagtagtgactatattttagagctgttaaatttgattccttttttg 46349877  T
Q  211 ctggtaaaactctatttggtggcgtacatatttttaaagatagaggtctttggttattgtaatatttgtgaactaacagcttgatagc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46349876 ctggtaaaactctatttggtggcgtacatatttttaaagatagaggtctttggttattgtaatatttgtgaactaacagcttgatagc 46349789  T

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