View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_high_15 (Length: 316)
Name: NF12742_high_15
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 33026021 - 33025759
Alignment:
| Q |
19 |
gcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttac |
118 |
Q |
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| T |
33026021 |
gcgtgtttgacatgcgaagatgtttttaagcgaatttgg-atcagaaactaacgaattgaatgacttgcataggcatcgaagttgaatgaggagttttac |
33025923 |
T |
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| Q |
119 |
cgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagtggttgttgttagggttccggtggaggtaagagtgagttga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
33025922 |
cgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagcggttgtagttagggttccggtggaggtaagagtgagttga |
33025823 |
T |
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| Q |
219 |
tgcgtcttcgttatgattgtttcctccatgagtgattgagaagaaatgacatcacttcgatcgaagttatcgcg |
292 |
Q |
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| T |
33025822 |
tgcgtc----------ttgtttcctccatgagtgattgagaagaaacgacatcacttcgatcgaagttatcgcg |
33025759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 33019622 - 33019389
Alignment:
| Q |
21 |
gtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttaccg |
120 |
Q |
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||||||||||||| ||||||||||||||| ||||| |||| ||||||||| ||||||| ||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
33019622 |
gtgtttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgactgacttgcagaggcatcgaagttgaataaggatttttaccg |
33019523 |
T |
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| Q |
121 |
ggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagtggttgttgttagggttccggtggaggtaagagtgagttgatg |
220 |
Q |
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| T |
33019522 |
ggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcggagttgttgttgttagggttccggtgaaggtaagagtgagttgatg |
33019423 |
T |
|
| Q |
221 |
cgtcttcgttatgattgtttcctccatgagtgat |
254 |
Q |
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|||||| |||| |||||||||||||||||||||| |
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| T |
33019422 |
cgtctttgttacgattgtttcctccatgagtgat |
33019389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 33037519 - 33037365
Alignment:
| Q |
18 |
cgcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagtttta |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||||| |
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| T |
33037519 |
cgcgtgtttgacatgcgaagatgtttcttagcgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagtttta |
33037420 |
T |
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| Q |
118 |
ccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtgg |
172 |
Q |
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|||| |||||||||||||||||||||| |||||| || |||||||| |||||||| |
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| T |
33037419 |
ccggaagtctgcatagaatttcagcgacgagatcaaacggaagagtgggtagtgg |
33037365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 281
Target Start/End: Complemental strand, 33023599 - 33023350
Alignment:
| Q |
25 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttaccgggag |
124 |
Q |
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|||||||||||| ||||| || |||||| ||||| | | | |||||||||||| |||||||| || ||| ||||||||| ||||||||| || |||| |
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| T |
33023599 |
ttgacatgcgaaagtgtttctttgcgaatacgggatcacacattaacgaattgaaggacttgcaaagacattgaagttgaaggaggagtttcacagggat |
33023500 |
T |
|
| Q |
125 |
tctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagtggttgttgttagggttccggtggaggtaagagtgagttgatgcgtc |
224 |
Q |
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||| || || |||||||| | |||||| ||||||||||| | |||||| ||| || ||||||||| |||| ||||||| ||| ||| || || |
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| T |
33023499 |
tctacaaaggatttcagcaaggagatcaaatggaagagttgttagtggcggagcggatgttgttagagttc-------ggtaagaatgaattgttgtatc |
33023407 |
T |
|
| Q |
225 |
ttcgttatgattgtttcctccatgagtgattgagaagaaatgacatcacttcgatcg |
281 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
33023406 |
tttgttgtgattgtttcctccatgagtgattgagaagaaactacattgcttcgatcg |
33023350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 2501533 - 2501458
Alignment:
| Q |
25 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaag |
100 |
Q |
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| T |
2501533 |
ttgacatacgaagatgtttctttgcgaatttaggatcagaaattaaagaattgaagaacttacaaaggcatcgaag |
2501458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 12217388 - 12217304
Alignment:
| Q |
25 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgag |
109 |
Q |
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|||||| |||||||||||| | || |||||||||| ||| | ||| |||||||| ||||| || ||||| ||||| |||||||| |
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| T |
12217388 |
ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgag |
12217304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 37758420 - 37758504
Alignment:
| Q |
19 |
gcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttg |
103 |
Q |
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||||| ||||||| |||||||| || |||||||||||||||| | | ||| ||||| || |||||||| |||||||| ||||| |
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| T |
37758420 |
gcgtggttgacatacgaagatgcttcttagcgaatttgggatccaagattaaagaattcaaggacttgcagaggcatcggagttg |
37758504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 24418155 - 24418235
Alignment:
| Q |
25 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaa |
105 |
Q |
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|||||| |||||| || || || ||||||||||||| ||| | ||| |||||||| |||||||| || || |||||||||| |
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| T |
24418155 |
ttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaa |
24418235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 25869469 - 25869541
Alignment:
| Q |
79 |
atgacttgcacaggcatcgaagttgaatgaggagttttaccgggagtctgcatagaatttcagcgatgagatc |
151 |
Q |
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| T |
25869469 |
atgacttgcaaatgcagcggagttgcatgaggaatttgatggggaatctgcataggatttcagcgatgagatc |
25869541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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