View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_high_16 (Length: 312)
Name: NF12742_high_16
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 9170504 - 9170219
Alignment:
| Q |
12 |
aaagggcatcgagtagattcatcactctgaccgattacaaggttcgttaacagcatcattaacggtgctaatattttgagtggcatgttgaattgtgaat |
111 |
Q |
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| T |
9170504 |
aaagggcatcgagtagattcatcactctgactgattacaaggttcgttaacagcatcattaacggtgctaatattttgagtggcatgttgaattgtgaat |
9170405 |
T |
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| Q |
112 |
cacagtcaaacttggtataatttttatatagcatcgcatgcttaggcagcagaagatatataacagaagaaacataattacctgtttgggccttggggaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9170404 |
cacagtcaaacttggtataatttttatatagcatagcatgcttaggcagcagaagatatataacagaagaaacataattacctgtttgggccttggggaa |
9170305 |
T |
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| Q |
212 |
tttaaaattgaaagtaatgctgctnnnnnnnngatgaataagaatggttcaaagtccaagacgatgtagaccctccagtcactatt |
297 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |
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| T |
9170304 |
tttaaaattgaaagtaatgctgctaaaaaaaagatgaataagaatcgttcaaagtccaagacgatgtacaccctccggtcactatt |
9170219 |
T |
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