View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_high_19 (Length: 260)
Name: NF12742_high_19
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_high_19 |
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| [»] scaffold1472 (1 HSPs) |
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| [»] scaffold0339 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold1472 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold1472
Description:
Target: scaffold1472; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 409 - 156
Alignment:
| Q |
7 |
agatgaacatattttctgcattgtatgaagtttaattcctgattgaatgaaacacacctgatgaaaccaatgaagcaagtgaagaattgaatgtgtccac |
106 |
Q |
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| T |
409 |
agatgaacatattttctgcattgtatgaagtttaattcctgattgaatgaaacacacctgatgaaaccaatgaagcaagtgaagaattgaatgtgtccac |
310 |
T |
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| Q |
107 |
ctcagacttctcttcaggacttgaactcagctgttaagaagcagaccaaatagcgattaaagagtgtgtttcaagtttcaacgacgatagtatctcgggc |
206 |
Q |
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| T |
309 |
ctcagacttctcttcaggacttgaactcagctgttaagaagcagaccaaatagagattaaagagtgtgtttcaagtttcaacgacgatagtatctcgggc |
210 |
T |
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| Q |
207 |
atgagttttggatttgaattttccacttgaaaatgataataaaggcaccagttt |
260 |
Q |
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| T |
209 |
atgagttttggatttgaattttccacttgaaaattatactaaaggcaccagttt |
156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 16693 - 16440
Alignment:
| Q |
7 |
agatgaacatattttctgcattgtatgaagtttaattcctgattgaatgaaacacacctgatgaaaccaatgaagcaagtgaagaattgaatgtgtccac |
106 |
Q |
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| T |
16693 |
agatgaacatattttctgcattgtatgaagtttaattcctgattgaatgaaacacacctgatgaaaccaatgaagcaagtgaagaattgaatgtgtccac |
16594 |
T |
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| Q |
107 |
ctcagacttctcttcaggacttgaactcagctgttaagaagcagaccaaatagcgattaaagagtgtgtttcaagtttcaacgacgatagtatctcgggc |
206 |
Q |
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| T |
16593 |
ctcagacttctcttcaggacttgaactcagctgttaagaagcagaccaaatagagattaaagagtgtgtttcaagtttcaacgacgatagtatctcgggc |
16494 |
T |
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| Q |
207 |
atgagttttggatttgaattttccacttgaaaatgataataaaggcaccagttt |
260 |
Q |
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| T |
16493 |
atgagttttggatttgaattttccacttgaaaattatactaaaggcaccagttt |
16440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 93 - 260
Target Start/End: Original strand, 2499 - 2666
Alignment:
| Q |
93 |
ttgaatgtgtccacctcagacttctcttcaggacttgaactcagctgttaagaagcagaccaaatagcgattaaagagtgtgtttcaagtttcaacgacg |
192 |
Q |
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| T |
2499 |
ttgaatgtgtccacctcagacttctcttcaggacttgaactcagctgttaagaagcagaccaaatagagattaaagagtgtgtttcaagtttcaacgacg |
2598 |
T |
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| Q |
193 |
atagtatctcgggcatgagttttggatttgaattttccacttgaaaatgataataaaggcaccagttt |
260 |
Q |
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| T |
2599 |
atagtatctcgggcatgagttttggatttgaattttccacttgaaaattatactaaaggcaccagttt |
2666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 93 - 260
Target Start/End: Original strand, 47273274 - 47273441
Alignment:
| Q |
93 |
ttgaatgtgtccacctcagacttctcttcaggacttgaactcagctgttaagaagcagaccaaatagcgattaaagagtgtgtttcaagtttcaacgacg |
192 |
Q |
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| T |
47273274 |
ttgaatgtgtccacctcagacttctcttcaggacttgaactcagctgttaagaagcagaccaaatagagattaaagagtgtgtttcaagtttcaacgacg |
47273373 |
T |
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| Q |
193 |
atagtatctcgggcatgagttttggatttgaattttccacttgaaaatgataataaaggcaccagttt |
260 |
Q |
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| T |
47273374 |
atagtatctcgggcatgagttttggatttgaattttccacttgaaaattatactaaaggcaccagttt |
47273441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 21011077 - 21011137
Alignment:
| Q |
196 |
gtatctcgggcatgagttttggatttgaattttccacttgaaaatgataataaaggcacca |
256 |
Q |
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| T |
21011077 |
gtatctcaagcatgaattttagatttgtattttccgcttaaaaatgataataaaggaacca |
21011137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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