View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12742_high_2 (Length: 549)
Name: NF12742_high_2
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 43120569 - 43120047
Alignment:
| Q |
18 |
aggaatttctcagttcctatacaatggaaaccattgcctttcttttgaaagttaacagcttcttaaagagtcacaacttcatatcaatgatttttattgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43120569 |
aggaatttctcagttcctatacaatggaaaccattgcctttcttttgaaagttaacaacttcttaaagagtcacaacttcatatcaatgatttttattgc |
43120470 |
T |
|
| Q |
118 |
ttaaaattgtgacaaaaagttgtttggtgatctcttatgtagttaaggaatatctattttcacaagttggaacatgttagaatttattcttttattgaag |
217 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43120469 |
ttaaaattgtgacaaaaaattgtttgatgatctcttatgtaattaaggaatatctattttcacaagttggaacatgttagaatttattcttttattgaag |
43120370 |
T |
|
| Q |
218 |
gggaggctgttgcaatgttcaagtctatcaaacggctagtcaaatgggacctcacaccgtgatttttgagagtgcctcacaaagttgaggaaattcatat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43120369 |
gggaggctgttgcaatgttcaagtctatcaaacggctagtcaaatgggacctcacaccgtgatttttgagagtgcctcacaaagttgaggaaattcatat |
43120270 |
T |
|
| Q |
318 |
cagagagtttcgcgttttaatttcacaaagtagaaatttattgtctttatatcccaactttgaggttaagcttaaagaaagtgcttattattacgagata |
417 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43120269 |
c--agagtttcgcgttttaatttcacaaagtagaaatttattgtctttatatcccaactttgaggttaagcttaaagaaagtgcttattattacgagata |
43120172 |
T |
|
| Q |
418 |
ttgttcacaagaaacacaaattttatgtggcaacaagaaactcatccaaataataaccatatatcctatgtatggtcaaccagaatttgattgatcaaat |
517 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43120171 |
ttgttcacaagaaacactaattttatgtggcaacatgaaactcatccaaataataaccatatatcctatgtatggtcaaccagaatttgattgatcaaat |
43120072 |
T |
|
| Q |
518 |
cccttattttgtaggattcttctct |
542 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
43120071 |
cccttattttgtaggattcttctct |
43120047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University