View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_high_4 (Length: 498)
Name: NF12742_high_4
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 424
Target Start/End: Original strand, 30393144 - 30393548
Alignment:
| Q |
21 |
aattactaggactaaaattttcatataatacaatatgttcaaatattgcatnnnnnnnnttagtgtgactaatgtatgaagtnnnnnnn--tgatgttcc |
118 |
Q |
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| T |
30393144 |
aattactaggactaaaattttcatataatacaat--gttcaaatattacataaaaaacattagtgtgactaatgtatgaagtaaaaaaaaatgatgttcc |
30393241 |
T |
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| Q |
119 |
ttgttgtagtaaatatatgtgtgaatgaagaaagttaaaaacattaaattaaatgataggtaacatgcagctgaatgctatgtcaattttgcctttccat |
218 |
Q |
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| T |
30393242 |
ttgttgtagtaaatatatgtgtgaatgaagaaagttaaaaacattaaattaaatgataggtaacatgcagctcaatgctatgtcaattttgcctttccat |
30393341 |
T |
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| Q |
219 |
tttgtgtttaaaaattttcctactccaaatttctttaactttccatttgtgtgatg-gaattgaattcacgggctagagtattgaaaagttgtcctttgg |
317 |
Q |
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| T |
30393342 |
tttgtgtttaacaattttcctactccaaatttctttaactttccctttgtgtgatgagaattgaattcatggggtagagtcttgaaaagttgtcctttgg |
30393441 |
T |
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| Q |
318 |
atctataggctctattattgttgtcatggatgagttttatgattccatgcatcaaaaggattcatggagggttgtggggtgttagttctcatcaccattc |
417 |
Q |
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| T |
30393442 |
atctataggctctattattgttgtcatggatgagttttatgattccatgcatcaaaaggattcatggagggttgtggggtgttagttctcatcaccattc |
30393541 |
T |
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| Q |
418 |
tatcaaa |
424 |
Q |
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| T |
30393542 |
tatcaaa |
30393548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 492
Target Start/End: Original strand, 30393589 - 30393655
Alignment:
| Q |
429 |
tattttttatcaaacattttgaactta---tatcataatgtttatgtttatccatgcttcatctcac |
492 |
Q |
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| T |
30393589 |
tattttttatcaaacattttgaacttatattatcataatgtttatgtttatctatgcttcatttcac |
30393655 |
T |
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