View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_high_5 (Length: 494)
Name: NF12742_high_5
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 29307071 - 29306891
Alignment:
| Q |
19 |
tatggatggttcaaaattaggttatttgtacacattaaaacaaaaccacctttacaatctaaaaaactaaaatgtctgtctatttactctttgtaactaa |
118 |
Q |
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| T |
29307071 |
tatggatggttcaaaattaagttatttatacacattaaaacaaaaccacctttacaatctaaaaaactaaaatgtctgtctatttactctttgtaactaa |
29306972 |
T |
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| Q |
119 |
gatatctatttgtggaaataatgttttcggtctgaaagctccgatgtctatttcttgggaattcttaagcataagaattac |
199 |
Q |
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| T |
29306971 |
gatatctatttgtggaaattatgttttcggtctgaaagctccgatgtctatttcttgggaattcttaagcataagaattac |
29306891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 29306811 - 29306735
Alignment:
| Q |
231 |
catacgtgaggaattgtttgagtaaaactaaaaagagtttcacatatttttctttaggatcaattctttcgatgctga |
308 |
Q |
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| T |
29306811 |
catacgtgaggaattgtttga-taaaactaaaaagagtttgacatatttttctttaggatgaattctttcgatgctga |
29306735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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