View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_high_6 (Length: 492)
Name: NF12742_high_6
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 54474077 - 54473611
Alignment:
| Q |
17 |
catgagtgttagtgtcttgagtaaattttgccaatccaaaatctgccacctaaatggatagaatcacttgataattacaattctttaataactaaacata |
116 |
Q |
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| T |
54474077 |
catgagtgttagtgtcttgagtaaattttgccaatccaaaatctgccacctaaatggatagaatcacttgataattacaattctttaataactaaacata |
54473978 |
T |
|
| Q |
117 |
tagtaaatgatcattatacgtactttggcttcaaagttgttttcaattagaatgtttgcacccttgatgtctcggtgaatgattctagggtgacctgcag |
216 |
Q |
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| T |
54473977 |
tagtaaatgatcattatacgtactttggcttcaaagttgttttcaattagaatgtttgcacccttgatgtctcggtgaatgattctagggtgacctgcag |
54473878 |
T |
|
| Q |
217 |
gttattgtttgaacaagttattaatgataatgttagtttttcgggcttaa-cctctagtttttggggggaagagggtaaattctggtcaatgaatattct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54473877 |
gttattgtttgaacaagttattaatgataatgttagtttttcgggcttaaccctctagtttttggggggaagagggtaaattctggtcaatgaatattct |
54473778 |
T |
|
| Q |
316 |
cgccatattcgaatttgagttctctctacggattcatccataaaaatgtattttagtcatttgtcaaaattagattacaagcacatagtaacttacagtc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54473777 |
cgccatattcgaatttgagttctctctacggattcatccataaaaatgtattttagtcatttgtcaaaattagattacaagcacatagtaacttacagtc |
54473678 |
T |
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| Q |
416 |
ctcatgtaaataagcaagtcctttggcggatccaaccgcaattttaagccttgtggcccaattcatc |
482 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54473677 |
ctcgtgtaaataagcaagtcctttggcggatccaaccgcaattttaagccttgtggcccaatccatc |
54473611 |
T |
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