View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_high_9 (Length: 430)
Name: NF12742_high_9
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 169 - 413
Target Start/End: Complemental strand, 2572069 - 2571825
Alignment:
| Q |
169 |
ttgatggatcctgtagttgttgttttaacttttaaggaattcaaaactaacaaatttatattttttatacaagtatttgtcgttttctccataattcctt |
268 |
Q |
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| T |
2572069 |
ttgatggatcctgtagttgttgttttaacttttaaggaattcaaaactaacaaatttatattttttatacaagtatttgtcgttttctccataattcctt |
2571970 |
T |
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| Q |
269 |
catattttcctgagtgcaataagtagttgagattaattttgatactttcaataaatcacaattcacacttgtatgaccttttacgtaaacaatacatagc |
368 |
Q |
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| T |
2571969 |
catattttcctgagtgcaataagtagttgagattaattttgatactttcaataaatcacaattcacacttgtatgaccttttacgtaaacaatacatagc |
2571870 |
T |
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| Q |
369 |
taaagccagccaaagccaaatttccattgcgatccaatagttttg |
413 |
Q |
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| T |
2571869 |
taaagccagccaaagccaaatttctattgcgatccaatagttttg |
2571825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 2572195 - 2572067
Alignment:
| Q |
14 |
atgaacaatagccattccccttgaacgtcacatgtgtgtatattgttttacgtgctagttatgctttgtgactacaatgatttacttcctttttctatga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572195 |
atgaacaatagccattccccttgaacgtcacatgtgtgtatattgttttacgtgctagttatgctttgtgactacaatgatttacttcctttttctatga |
2572096 |
T |
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| Q |
114 |
atatcaactttttattcagaaaagtgttg |
142 |
Q |
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| T |
2572095 |
atatcaactttttattcagaaaagtgttg |
2572067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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