View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_low_1 (Length: 550)
Name: NF12742_low_1
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 16 - 541
Target Start/End: Original strand, 39418229 - 39418760
Alignment:
| Q |
16 |
acctgtttcttggctaaggttctgagtctctttggtgttactatggtaccaccacaacgcacaacagaatgtgatttggtcaagtatttggcataagcta |
115 |
Q |
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| T |
39418229 |
acctgtttcttggctaaggttctgagtctctttggtgttactatggtaccaccacaacgcacaacagaatgtgatttggtcaagtatttggcataagcta |
39418328 |
T |
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| Q |
116 |
ccagtaagaagctagtggatgtgacatactgcatgttactatcactcatcttgaacaaaagcccacctgtaaagtttcacaagctcaaaaacagttacat |
215 |
Q |
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| T |
39418329 |
ccagtaagaagctagtggatgtgacatactgcatgttactatcactcatcttgaacaaaagcccacctgtaaagtttcacaagctcaaaaacagttacat |
39418428 |
T |
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| Q |
216 |
cttggaccacatgaaaccaatagcgttaatactgaaagagaagaaagagggaccttaccaggggtatattgtgcagaagaggatccagctccaggaatta |
315 |
Q |
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| T |
39418429 |
cttggaccacatgaaaccaatagagttaatactgaaagagaagaaagagggaccttaccaggggtatattgtgcagaagaggatccagctccaggaatta |
39418528 |
T |
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| Q |
316 |
aagagcaaacaaaattgtctgaatgacccttgtagtcatggagggatcttaccctttgaactagaaattcctaaaaccac------aaaatnnnnnnnca |
409 |
Q |
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| T |
39418529 |
aagagcaaacaaaattgtctgaatgacccttgtagtcatggagggatcttaccctttgaactagaaattcctaaaatcacaaaaaaaaaaaaaaaaaaca |
39418628 |
T |
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| Q |
410 |
tgttaggtttaaaacattattgataatttgtttgatactatgttgtcaaatttaggacctttgaaagaagtatccttgctccaacatgtttgttatccca |
509 |
Q |
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| T |
39418629 |
tgttagttttaaaacattattgataatttgtttgatactatgttgtgaaatttaggacctttgaaagaagtatccttgctccaacatgtttgttatccca |
39418728 |
T |
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| Q |
510 |
accaaatgtgttgtcaaactctgctgctccta |
541 |
Q |
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| T |
39418729 |
accaaatgtgttgtcaaactctgctgctccta |
39418760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 44512079 - 44512021
Alignment:
| Q |
457 |
aaatttaggacctttgaaagaagtatccttgctccaacatgtttgttatcccaaccaaa |
515 |
Q |
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| T |
44512079 |
aaattttggaccttagaaaggagtatccttgctccagcatgtttgttatcccatccaaa |
44512021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 44513191 - 44513058
Alignment:
| Q |
43 |
ctctttggtgttactatggtaccaccacaacgcacaacagaatgtgatttggtcaagtatttggcataagctaccagtaagaagctagtggatgtgacat |
142 |
Q |
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| T |
44513191 |
ctctttggagttatgatggttccaccacagttcacaacagtatgtgaagtagttaagtattttgcataagttaagagtagaaaggatgtggacgtgacat |
44513092 |
T |
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| Q |
143 |
actgcatgttactatcactcatcttgaacaaaag |
176 |
Q |
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| T |
44513091 |
attgcatgttactatcattcatcttgaacaaaag |
44513058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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