View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_low_12 (Length: 346)
Name: NF12742_low_12
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 26790050 - 26789733
Alignment:
| Q |
18 |
agaagtgtctatgcttcatatacatcaactctttcaactaattaaatacgataaatatataaatgacagttaagttgtaacgtcgatttttggttttgac |
117 |
Q |
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| T |
26790050 |
agaagtgtctatgcttcatatatatcaactctttcaactaattaaatacgataaatatataaatgacagttaagttgtaacgtcgatttttggttttgac |
26789951 |
T |
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| Q |
118 |
aggaaacctattaaaaggatggagcaattcgacaatcaaaattcctatcaaaatcaaggttaacaaggatatacctggaaatactccagcaaatccatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26789950 |
aggaaacctattaaaaggatggagcaattcgacaatcaaaattcctatcaaaatcaaggttaacaaggatatacctggaaatactccagcaaatccatca |
26789851 |
T |
|
| Q |
218 |
gccttctcgatcaactcatcaataggaacctctaaattagcagaatttttgccttgaccaagcaatgcagatgatggatacatgttcgttcccattccaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
26789850 |
gccttctcgatcaactcatcaataggaacctctaaattagcagaatttttgccttgaccaagcaatgcagatgatggatacatgtttgtgcccattccaa |
26789751 |
T |
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| Q |
318 |
gccgtctacctgtttctt |
335 |
Q |
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||| |||||||||||||| |
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| T |
26789750 |
gccttctacctgtttctt |
26789733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 102 - 335
Target Start/End: Complemental strand, 1462431 - 1462191
Alignment:
| Q |
102 |
gatttttggttttgacaggaaacctattaaaaggatggagcaattcgacaatcaaaattcctatcaaaa-------tcaaggttaacaaggatatacctg |
194 |
Q |
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| T |
1462431 |
gatttttggttttgacagggaatctatctaagggatggagcaattcgacaatcaaaattcctgccaaaacaaaaaattaacattaaaaaaaacatacctg |
1462332 |
T |
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| Q |
195 |
gaaatactccagcaaatccatcagccttctcgatcaactcatcaataggaacctctaaattagcagaatttttgccttgaccaagcaatgcagatgatgg |
294 |
Q |
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|||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||| ||| || || || |||||||||||| ||||||||||| |
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| T |
1462331 |
gaaatactccggcaaatccgtcagccttctcaatcaactcgtcaataggaacatctaaagtagaagcatccctgtcttgaccaagcagggcagatgatgg |
1462232 |
T |
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| Q |
295 |
atacatgttcgttcccattccaagccgtctacctgtttctt |
335 |
Q |
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|||||| || |||||||||||||||| |||||||||||||| |
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| T |
1462231 |
atacatatttgttcccattccaagccttctacctgtttctt |
1462191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 188 - 333
Target Start/End: Original strand, 1497175 - 1497320
Alignment:
| Q |
188 |
atacctggaaatactccagcaaatccatcagccttctcgatcaactcatcaataggaacctctaaattagcagaatttttgccttgaccaagcaatgcag |
287 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||| | || ||| ||||| |||| ||||||||||||| |||| |
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| T |
1497175 |
atacctggaaatactcctgcaaatccatcagccttctcgatcaactcgtcaactggaagagccgaaatagaagaatctttgtcttgaccaagcaaagcag |
1497274 |
T |
|
| Q |
288 |
atgatggatacatgttcgttcccattccaagccgtctacctgtttc |
333 |
Q |
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| T |
1497275 |
acgatggatacatgtttgttcccattccaagccttctaccagtttc |
1497320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 194 - 320
Target Start/End: Complemental strand, 50276007 - 50275881
Alignment:
| Q |
194 |
ggaaatactccagcaaatccatcagccttctcgatcaactcatcaataggaacctctaaattagcagaatttttgccttgaccaagcaatgcagatgatg |
293 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||||||| |||| || || ||||| || |||| |||||| ||||||| ||| |||| |
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| T |
50276007 |
ggaaacactccagcaaatccatcagccttctcaatcaactcatcaactggaagagctgaaacagcagcatccttgctttgaccgagcaatgaagaagatg |
50275908 |
T |
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| Q |
294 |
gatacatgttcgttcccattccaagcc |
320 |
Q |
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||||||||||||||||||||||||||| |
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| T |
50275907 |
gatacatgttcgttcccattccaagcc |
50275881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 53075708 - 53075757
Alignment:
| Q |
190 |
acctggaaatactccagcaaatccatcagccttctcgatcaactcatcaa |
239 |
Q |
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||||||||||||||||||||| |||||||||||||| |||| ||| |||| |
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| T |
53075708 |
acctggaaatactccagcaaacccatcagccttctcaatcagctcttcaa |
53075757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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