View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_low_14 (Length: 332)
Name: NF12742_low_14
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 161 - 325
Target Start/End: Original strand, 18319371 - 18319535
Alignment:
| Q |
161 |
cccatgaaaacggtattaaatgatgatcaaacggcagcgtttttagaagcttcaagatcagcagctttcttcaaaagattcatctcatcatcatcttcaa |
260 |
Q |
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| T |
18319371 |
cccatgaaaacggtattaaatgatgatcaaacggcagcgtttttagaagcttcaagatcagcagctttcttcaaaagattcatctcatcatcatcttcaa |
18319470 |
T |
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| Q |
261 |
gaaccatctgaataggcgaagaacccaatccatcagctatagcaagcataatcttcttcatctca |
325 |
Q |
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| T |
18319471 |
gaaccatctgaataggcgaagaacctaatccatcagcaatagcaagcataatcttcttcatctca |
18319535 |
T |
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Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 18319239 - 18319325
Alignment:
| Q |
25 |
tgtttatttaagatactaattgtgattatttaacatttcatcttctatgtaattattctcatcatacaaccaaatacacgctaagtt |
111 |
Q |
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| T |
18319239 |
tgtttatttaagatactacttgtgattatttaacatttcatcttctatgtaattattctcatcatataaccaaatacacgctaagtt |
18319325 |
T |
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