View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_low_18 (Length: 290)
Name: NF12742_low_18
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 53104417 - 53104143
Alignment:
| Q |
7 |
gagagaagaatatggccacttggaaaagtagatgctatttgcttctcactttccgcaaaattttcaaattcgtagatattcaaagtatcgaattaataga |
106 |
Q |
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| T |
53104417 |
gagagaagaatatggccccttggaaaagtagatgctatttgcttctcactttccgcaaaattttcaaattcgtagatattcaaagtatcgaattaataga |
53104318 |
T |
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| Q |
107 |
aaaccgattatcttcaactactacatcttacttttctttggtctcaatttcttttcatatatcctaaattataaaccatttatagttccataccagaatg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53104317 |
aaaccgattatcttcaactactacatcttacttttctttggcctcaatttcttttcatatatcctaaattataaaccatttatagttccataccggaatg |
53104218 |
T |
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| Q |
207 |
ttggaatcttctaaaatccaaagagggtaatgacatgactccaatgggggataggtgtagaaaaggaaattagtg |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53104217 |
ttggaatcttctaaaatccaaagagggtaatgacatgactccaatgggggataggtgtagaaaaggaaattagtg |
53104143 |
T |
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