View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_low_19 (Length: 260)
Name: NF12742_low_19
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_low_19 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 89179 - 88936
Alignment:
| Q |
1 |
gggatcgaaggcatgttcgatactatttcaacttgccacggattcactcttttcacatttttaagtaactcaggttcatcccatgtaacctaaaaagtat |
100 |
Q |
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| T |
89179 |
gggatcgaaggcatgttcgatactatttcaacttgccacggattcactcttttcacatttttaagtaactcaggttcatcccatgtaacctaaaaagtat |
89080 |
T |
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| Q |
101 |
gacatcagaaaattattcacagctgaaacaaagttcaaaatgtaattcaaaatgacagtaatatgcaataaaaaggacattgtgaaattcattagtatga |
200 |
Q |
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| T |
89079 |
gacatcagaaaattattcacagctgaaacaaagttcaaaatgtaattcaaaatgacagtaatatgcaataaaaaggacattgtgaaattcattagtatga |
88980 |
T |
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| Q |
201 |
aatactaatctaattcacttcttacaattttattaggtaccaac |
244 |
Q |
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| T |
88979 |
aatactaatctaattcacttcttacaattttattaggtaccaac |
88936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 40877104 - 40877347
Alignment:
| Q |
1 |
gggatcgaaggcatgttcgatactatttcaacttgccacggattcactcttttcacatttttaagtaactcaggttcatcccatgtaacctaaaaagtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877104 |
gggatcgaaggcatgttcgatactatttcaacttgccacggattcactcttttcacatttttaagtaactcaggttcatcccatgtaacctaaaaagtat |
40877203 |
T |
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| Q |
101 |
gacatcagaaaattattcacagctgaaacaaagttcaaaatgtaattcaaaatgacagtaatatgcaataaaaaggacattgtgaaattcattagtatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877204 |
gacatcagaaaattattcacagctgaaacaaagttcaaaatgtaattcaaaatgacagtaatatgcaataaaaaggacattgtgaaattcattagtatga |
40877303 |
T |
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| Q |
201 |
aatactaatctaattcacttcttacaattttattaggtaccaac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877304 |
aatactaatctaattcacttcttacaattttattaggtaccaac |
40877347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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