View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12742_low_23 (Length: 248)
Name: NF12742_low_23
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29662257 - 29662018
Alignment:
| Q |
1 |
ttgcacctaaagcaagttatgactgtgtgacagcacaatagtgagtaataaaaccttgaaggtgatgatgccaacattctaaaatcacagaacagtaccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29662257 |
ttgcacctaaagcaagttatgactgtgtgacagcacaatagtgagtaataaaaccttgaaggtgatgatgccaacattctaaaatcacagaacagtgccg |
29662158 |
T |
|
| Q |
101 |
caaacaaatgttggttttcatgcccaccatccataatttgttttgaggacgcttcattttgagaagatgtgagagtccagctataacatgtaaacgacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
29662157 |
caaacaaatgttggttttcatgcccaccatccataatttgttttgaggacgcttcattttgagataatgtgagagtccagttataacatgtaaacgacta |
29662058 |
T |
|
| Q |
201 |
tttaggacacctaacttagacacagggcccttcctttgct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29662057 |
tttaggacacctaacttagacacagggcccttcctttgct |
29662018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 84 - 238
Target Start/End: Original strand, 33183914 - 33184066
Alignment:
| Q |
84 |
atcacagaacagtaccgcaaacaaatgttggttttcatgcccaccatccataatttgttttgaggacgcttcattttgagaagatgtgagagtccagcta |
183 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33183914 |
atcatagaacagtaccgcaaacaaatgttggttttcatgcccaccatccattaactttgttgaggacgcttcattttgagaagatgcgagagtccagcta |
33184013 |
T |
|
| Q |
184 |
taacatgtaaacgactatttaggacacctaacttagacacagggcccttcctttg |
238 |
Q |
| |
|
||||||||| |||||||| | ||||||| |||||| |||||||||||||||| |
|
|
| T |
33184014 |
taacatgtagacgactatgtgggacacccgacttag--ccagggcccttcctttg |
33184066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 17755503 - 17755564
Alignment:
| Q |
143 |
ttgaggacgcttcattttgagaagatgtgagagtccagctataacatgtaaacgactattta |
204 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17755503 |
ttgaggacgcttcattttgagataatgtgagagtccagttataacatgtaaacgactattta |
17755564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 33183555 - 33183633
Alignment:
| Q |
1 |
ttgcacctaaagcaagttatgactgtgtgacagcacaatagtgagtaa-taaaaccttgaaggtgatgatgccaacattcta |
81 |
Q |
| |
|
|||||||||||||| | |||||||||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
33183555 |
ttgcacctaaagcatgctatgactgtg---cagtacaatagtgagtaactaaaacattgaaggtgatgatgccaacattcta |
33183633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University