View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_low_24 (Length: 247)
Name: NF12742_low_24
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 24846018 - 24846244
Alignment:
| Q |
20 |
gtggtaacatcattgacgtctaatctactaaccatggtctccccgataagaaggtcctaaccaacctctagatgctcataattaaggacaaaaaattgaa |
119 |
Q |
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| T |
24846018 |
gtggtaacatcattgacgtctaaactactaaccatggtctccccgataagaaggtcctaaccaacctctagatgctcataattaaggacaaaaaattgaa |
24846117 |
T |
|
| Q |
120 |
ttttaagggtgatatcaatctccccttcaactaactcttatttagtgaagcttgtagcctacactggctaagtagtgatgacggagcatgatatgatgtt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24846118 |
ttttaagggtgatatcaatctccccttcaactaactcttatttagtgaagcttgtagcctacactagctaagtagtgatgacggagcatgatatgatgtt |
24846217 |
T |
|
| Q |
220 |
ttaggctatatttttagttactttctt |
246 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
24846218 |
ttaggctatatttttagttactttctt |
24846244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 22968028 - 22967983
Alignment:
| Q |
192 |
tagtgatgacggagcatgatatgatgttttaggctatatttttagt |
237 |
Q |
| |
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|||||||||||||| || ||||||| ||||||||||| |||||||| |
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| T |
22968028 |
tagtgatgacggagtatcatatgatattttaggctatgtttttagt |
22967983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 24130586 - 24130631
Alignment:
| Q |
194 |
gtgatgacggagcatgatatgatgttttaggctatatttttagtta |
239 |
Q |
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||||||| ||||||||||||||| ||||||||||| ||| |||||| |
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| T |
24130586 |
gtgatgatggagcatgatatgatattttaggctatgtttatagtta |
24130631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 23137613 - 23137561
Alignment:
| Q |
194 |
gtgatgacggagcatgatatgatgttttaggctatatttttagttactttctt |
246 |
Q |
| |
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||||| ||| ||||| |||| || |||||||||||||||||||||| |||||| |
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| T |
23137613 |
gtgatcacgaagcatcatataatattttaggctatatttttagttattttctt |
23137561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 22164435 - 22164384
Alignment:
| Q |
193 |
agtgatgacggagcatgatatgatgttttaggctatatttttagttactttc |
244 |
Q |
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|||||||| ||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
22164435 |
agtgatgatggagcatcatatgatattttaggctatatttttagttattttc |
22164384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 18236485 - 18236434
Alignment:
| Q |
195 |
tgatgacggagcatgatatgatgttttaggctatatttttagttactttctt |
246 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| |||||||||| |||||| |
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|
| T |
18236485 |
tgatgacggagcatcatatgatattttatgctatgtttttagttattttctt |
18236434 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 27869447 - 27869396
Alignment:
| Q |
195 |
tgatgacggagcatgatatgatgttttaggctatatttttagttactttctt |
246 |
Q |
| |
|
|||||||||| ||| |||| || |||||||||||||||||||||| |||||| |
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|
| T |
27869447 |
tgatgacggatcataatataatattttaggctatatttttagttattttctt |
27869396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 21505324 - 21505280
Alignment:
| Q |
193 |
agtgatgacggagcatgatatgatgttttaggctatatttttagt |
237 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||||| |||||||| |
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| T |
21505324 |
agtgatgacggagcatcatatgatatttttggctatgtttttagt |
21505280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 39730378 - 39730430
Alignment:
| Q |
194 |
gtgatgacggagcatgatatgatgttttaggctatatttttagttactttctt |
246 |
Q |
| |
|
|||||| |||||||| |||| || ||||||||||| |||||||||| |||||| |
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|
| T |
39730378 |
gtgatggcggagcatcatataatattttaggctatgtttttagttattttctt |
39730430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 13530291 - 13530244
Alignment:
| Q |
192 |
tagtgatgacggagcatgatatgatgttttaggctatatttttagtta |
239 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||| |||||||||| |
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| T |
13530291 |
tagtcatgatggagcatcatatgatgttttaggctatgtttttagtta |
13530244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 13619830 - 13619783
Alignment:
| Q |
192 |
tagtgatgacggagcatgatatgatgttttaggctatatttttagtta |
239 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||| |||||||||| |
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| T |
13619830 |
tagtcatgatggagcatcatatgatgttttaggctatgtttttagtta |
13619783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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