View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12742_low_28 (Length: 229)

Name: NF12742_low_28
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12742_low_28
NF12742_low_28
[»] chr5 (3 HSPs)
chr5 (32-229)||(24846318-24846515)
chr5 (42-108)||(17695299-17695365)
chr5 (47-96)||(11997734-11997783)
[»] chr2 (2 HSPs)
chr2 (47-108)||(39730659-39730720)
chr2 (32-108)||(24047595-24047671)
[»] chr1 (3 HSPs)
chr1 (103-197)||(15416905-15416999)
chr1 (47-108)||(31313764-31313825)
chr1 (51-96)||(34935181-34935226)
[»] chr3 (1 HSPs)
chr3 (33-106)||(21653561-21653634)
[»] chr7 (2 HSPs)
chr7 (32-108)||(19139809-19139884)
chr7 (32-108)||(20739208-20739283)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 24846515 - 24846318
Alignment:
Q  32 gtccttttgtgagcattcttccgtcttgaaataccttggaacttggggtgaattttacccaacttttatcgtcttcatatcccttgatctttcatgtgnn 131  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||      
T  24846515 gtccttttgtgagcattcttccgtcttaaaataccttggaacttgggatgaattttacccaacttgtatcgtcttcatatcccttgatctttcatgtgtt 24846416  T
Q  132 nnnnncctttgccaaattacatgatttatatataagaagactcaaaacacctctagagttgcatgaacaaggaagaaactaaattacgataactcgaa 229  Q
         ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24846415 tttttcctttgccaaattacatgatttatatataagaagactcaaaacacctgtagagttgcatgaacaaggaagaaactaaattacgataactcgaa 24846318  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 17695299 - 17695365
Alignment:
Q  42 gagcattcttccgtcttgaaataccttggaacttggggtgaattttacccaacttttatcgtcttca 108  Q
    |||| |||||| |||||||||| ||||||||||| || |||||||| |||||||| ||| |||||||    
T  17695299 gagcgttcttcggtcttgaaatgccttggaacttaggatgaattttccccaacttgtattgtcttca 17695365  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 11997734 - 11997783
Alignment:
Q  47 ttcttccgtcttgaaataccttggaacttggggtgaattttacccaactt 96  Q
    ||||||||||||||| |||||| ||||||||| ||||||||  |||||||    
T  11997734 ttcttccgtcttgaattacctttgaacttgggatgaattttttccaactt 11997783  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 39730720 - 39730659
Alignment:
Q  47 ttcttccgtcttgaaataccttggaacttggggtgaattttacccaacttttatcgtcttca 108  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||||||| |||| |||||||    
T  39730720 ttcttccgtcttgaaatgccttggaacttgggatgaattttccccaactcttattgtcttca 39730659  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 24047671 - 24047595
Alignment:
Q  32 gtccttttgtgagcattcttccgtcttgaaataccttggaacttggggtgaattttacccaacttttatcgtcttca 108  Q
    ||||||||  |||| || |||| ||||||||| |||||||||||||| |||||||| || ||||| ||| |||||||    
T  24047671 gtcctttttcgagcgtttttccatcttgaaatgccttggaacttgggttgaattttccctaacttgtattgtcttca 24047595  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 15416905 - 15416999
Alignment:
Q  103 tcttcatatcccttgatctttcatgtgnnnnnnncctttgccaaattacatgatttatatataagaagactcaaaacacctctagagttgcatga 197  Q
    |||||||||||||||||| ||||||||        ||||||| |||||||||||||   ||||| |||||||||||||||| || ||||||||||    
T  15416905 tcttcatatcccttgatccttcatgtggtgtcttgctttgccgaattacatgatttgactataaaaagactcaaaacacctatacagttgcatga 15416999  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 31313825 - 31313764
Alignment:
Q  47 ttcttccgtcttgaaataccttggaacttggggtgaattttacccaacttttatcgtcttca 108  Q
    ||||||||||||||||| ||||||||||| || | |||||| || ||||| ||| |||||||    
T  31313825 ttcttccgtcttgaaatgccttggaacttaggattaatttttcctaacttgtattgtcttca 31313764  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 34935181 - 34935226
Alignment:
Q  51 tccgtcttgaaataccttggaacttggggtgaattttacccaactt 96  Q
    ||||||||||||| |||| ||||||||| |||||||| ||||||||    
T  34935181 tccgtcttgaaatgccttagaacttgggatgaattttccccaactt 34935226  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 21653634 - 21653561
Alignment:
Q  33 tccttttgtgagcattcttccgtcttgaaataccttggaacttggggtgaattttacccaacttttatcgtctt 106  Q
    |||||||  |||| |||||| |||||||||| ||||  |||||||| |||||||| |||||||||||| |||||    
T  21653634 tcctttttcgagcgttcttcggtcttgaaatgccttaaaacttgggatgaattttgcccaacttttattgtctt 21653561  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 19139809 - 19139884
Alignment:
Q  32 gtccttttgtgagcattcttccgtcttgaaataccttggaacttggggtgaattttacccaacttttatcgtcttca 108  Q
    |||||| | ||||| |||||||||||| |||| |||| ||||||||| ||||||||| | ||||| ||| |||||||    
T  19139809 gtccttgtttgagctttcttccgtcttaaaattcctt-gaacttgggatgaattttagctaacttgtattgtcttca 19139884  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 20739208 - 20739283
Alignment:
Q  32 gtccttttgtgagcattcttccgtcttgaaataccttggaacttggggtgaattttacccaacttttatcgtcttca 108  Q
    |||||| | ||||| |||||||||||| |||| |||| ||||||||| ||||||||| | ||||| ||| |||||||    
T  20739208 gtccttgtttgagctttcttccgtcttaaaattcctt-gaacttgggatgaattttagctaacttgtattgtcttca 20739283  T

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