View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_low_29 (Length: 225)
Name: NF12742_low_29
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 36416415 - 36416191
Alignment:
| Q |
1 |
atgggcaaaactagaaattgggttgttgcacttaaatctcttatgattgtccttagaatatttcaagatggtgatccatattttcctcgagaagtttttc |
100 |
Q |
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| T |
36416415 |
atgggcaaaactagaaattgggttgttgcacttaaatctcttatgattgtccttagaatatttcaagatggtgatccatattttcctagagaagtttttc |
36416316 |
T |
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| Q |
101 |
atttaatgaaaaggggtgcaaaaattctcaacctttcaagtttcaaagatgattccaattctagtccttgggattacactgcatttataagaacattcgc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36416315 |
attcaatgaaaaggggtgcaaaaattctcaacctttcaagtttcaaagatgattccaattctagtccttgggattacactgcatttataagaacattcgc |
36416216 |
T |
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| Q |
201 |
attgtaccttgatgaacgattagat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
36416215 |
attgtaccttgatgaacgattagat |
36416191 |
T |
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