View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12742_low_30 (Length: 211)
Name: NF12742_low_30
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12742_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 45141579 - 45141375
Alignment:
| Q |
1 |
cttcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttgctggccaaattcatcattgatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
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| T |
45141579 |
cttcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaattcatcattgatatc |
45141480 |
T |
|
| Q |
101 |
tgctataactacaaatgctccattttccacgaatgtcttcactgtctccgcccctattccgcttgctcccccagtcactatagcaaccttaccctccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141479 |
tgctataactacaaatgctccattttccacgaatgtcttcgctgtctccgcccctattccgcttgctcccccagtcactatagcaaccttaccctccaac |
45141380 |
T |
|
| Q |
201 |
ctatg |
205 |
Q |
| |
|
||||| |
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| T |
45141379 |
ctatg |
45141375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 45152220 - 45152018
Alignment:
| Q |
3 |
tcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttgctggccaaattcatcattgatatctg |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
45152220 |
tcaacttgtttttcatcactcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaattcatcattgatatctg |
45152121 |
T |
|
| Q |
103 |
ctataactacaaatgctccattttccacgaatgtcttcactgtctccgcccctattccgcttgctcccccagtcactatagcaaccttaccctccaacct |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45152120 |
ctataactacaaatgctccattttccacgaatgtcttcactgtctccgcccctattccgcttgctcccccagtcactatagcaaccttaccctccaacct |
45152021 |
T |
|
| Q |
203 |
atg |
205 |
Q |
| |
|
||| |
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| T |
45152020 |
atg |
45152018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 38256044 - 38255843
Alignment:
| Q |
3 |
tcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttgctggccaaattcatcattgatatctg |
102 |
Q |
| |
|
||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||| |
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| T |
38256044 |
tcaacttgtttctcctctctcacgtcacagtggtggtaactcactttgtctaacccaattgaagttgcaagttggtgacccaattcatcattgatatctg |
38255945 |
T |
|
| Q |
103 |
ctataactacaaatgctccattttccacgaatgtcttcactgtctccgcccctattccgcttgctcccccagtcactatagcaaccttaccctccaacct |
202 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||| |||| || || |||||||| |||||| |||||||||||||||| ||||||||||||||||| |
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| T |
38255944 |
ctatgactacaaatgctccattttccacaaatatctttactgcttctgctcctattccacttgctgccccagtcactatagctaccttaccctccaacct |
38255845 |
T |
|
| Q |
203 |
at |
204 |
Q |
| |
|
|| |
|
|
| T |
38255844 |
at |
38255843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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