View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12742_low_7 (Length: 452)

Name: NF12742_low_7
Description: NF12742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12742_low_7
NF12742_low_7
[»] chr1 (2 HSPs)
chr1 (19-452)||(5129664-5130097)
chr1 (187-279)||(26324491-26324584)
[»] chr5 (10 HSPs)
chr5 (196-297)||(8527890-8527991)
chr5 (195-322)||(8640456-8640583)
chr5 (205-418)||(8643414-8643630)
chr5 (217-297)||(8636121-8636201)
chr5 (196-295)||(8534468-8534567)
chr5 (19-72)||(8640656-8640709)
chr5 (20-59)||(8677535-8677574)
chr5 (244-297)||(8549058-8549111)
chr5 (244-297)||(9075311-9075364)
chr5 (258-322)||(9002289-9002353)
[»] chr4 (1 HSPs)
chr4 (196-297)||(9442057-9442158)
[»] chr7 (1 HSPs)
chr7 (197-297)||(48362698-48362797)


Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 5130097 - 5129664
Alignment:
Q  19 aaattgcgggaagaaaatgaagttttttccttgtcccaacagattgtggaaagtacacattcttcatcatcttatcctgacataataaatatatcttcct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130097 aaattgcgggaagaaaatgaagttttttccttgtcccaacagattgtggaaagtacacattcttcatcatcttatcctgacataataaatatatcttcct 5129998  T
Q  119 ccgaatctgatggagaagactgaagaattcaacgaagagcccacttcttaagaatagtactgtatgtgtgttttctcattgattggtattctgactcctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  5129997 ccgaatctgatggagaagactgaagaattcaacgaagagcccacttcttaagaatagtattgtatgtgtattttctcattgattggtattctgactcctg 5129898  T
Q  219 cttagtacaattttaggcacattatttaggctttgttacgtaatattggtcttattttatataggtgtgcaaattttaatctgcgagaaagaaatgaaga 318  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129897 cttagtacaattttaggcacattatttaggccttgttacgtaatattggtcttattttatataggtgtgcaaattttaatctgcgagaaagaaatgaaga 5129798  T
Q  319 tcttcaatatgactcttgacaggtaccctcctccggtgagacttttgatgaaagagtacaactgaaatgaagcaacttccatacaataggtagggttatg 418  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129797 tctttaatatgactcttgacaggtaccctcctccggtgagacttttgatgaaagagtacaactgaaatgaagcaacttccatacaataggtagggttatg 5129698  T
Q  419 aaagttcttgttttaggatgcaaatgatgtcttt 452  Q
    |||||||||||||||||||| |||||||||||||    
T  5129697 aaagttcttgttttaggatgaaaatgatgtcttt 5129664  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 26324491 - 26324584
Alignment:
Q  187 tgttttctcattgattggtattctgactcctgcttagtacaattttaggcacatt-atttaggctttgttacgtaatattggtcttattttata 279  Q
    |||||||  |||||||||||||||||| | |||||| |||||||||||| |  || | |||| |||||||| ||||||||||| ||||||||||    
T  26324491 tgttttcgtattgattggtattctgacccttgcttattacaattttaggtatgttaacttagactttgttatgtaatattggtgttattttata 26324584  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 8527991 - 8527890
Alignment:
Q  196 attgattggtattctgactcctgcttagtacaattttaggcacattatttaggctttgttacgtaatattggtcttattttatataggtgtgcaaatttt 295  Q
    |||||||||||||||||| |||||||| |||||||||||| |  ||| |||| |||||||| ||||||||||| ||||||||||||||||||||||| ||    
T  8527991 attgattggtattctgacccctgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaaatatt 8527892  T
Q  296 aa 297  Q
    ||    
T  8527891 aa 8527890  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 322
Target Start/End: Complemental strand, 8640583 - 8640456
Alignment:
Q  195 cattgattggtattctgactcctgcttagtacaattttaggcacattatttaggctttgttacgtaatattggtcttattttatataggtgtgcaaattt 294  Q
    |||||||| ||||| |||| |||||||| ||||||||||||||| ||| |||| ||||||| ||||  |||||| |||||||||||||||||||||| ||    
T  8640583 cattgatttgtattttgacccctgcttactacaattttaggcacgttacttagactttgtttcgtaccattggtgttattttatataggtgtgcaaaatt 8640484  T
Q  295 taatctgcgagaaagaaatgaagatctt 322  Q
    |||  |||| |||  |||||||||||||    
T  8640483 taaattgcgtgaagaaaatgaagatctt 8640456  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 205 - 418
Target Start/End: Complemental strand, 8643630 - 8643414
Alignment:
Q  205 tattctgactcctgcttagtacaattttaggcacattatttaggctttgttacgtaatattggtcttattttatataggtgtgcaaattttaatctgcga 304  Q
    ||||||||| | ||| || ||||||||||||||| ||| ||||||| | ||  ||||||||||| ||||||||||||||||||||||||||||  |        
T  8643630 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatat 8643532  T
Q  305 gaaagaaatgaagatcttcaat-atgactcttgacaggtaccctcctc---cggtgaga--cttttgatgaaagagtacaactgaaatgaagcaacttcc 398  Q
    |||| ||||||||||||| ||| ||||  ||||||| |||||||||||   | ||||||  |||||||||||||||||||||| ||| |||| |  || |    
T  8643531 gaaaaaaatgaagatcttgaatgatga--cttgacaagtaccctcctccttctgtgagaggcttttgatgaaagagtacaactaaaaagaaggatttttc 8643434  T
Q  399 atacaataggtagggttatg 418  Q
    |||||| ||| |||||||||    
T  8643433 atacaaaaggaagggttatg 8643414  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 8636201 - 8636121
Alignment:
Q  217 tgcttagtacaattttaggcacattatttaggctttgttacgtaatattggtcttattttatataggtgtgcaaattttaa 297  Q
    |||||| |||||||||||| |||||| | ||||| ||||||||||||||||  ||||||||||||||| ||||||||||||    
T  8636201 tgcttaatacaattttaggtacattactaaggctctgttacgtaatattggcgttattttatataggtatgcaaattttaa 8636121  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 196 - 295
Target Start/End: Complemental strand, 8534567 - 8534468
Alignment:
Q  196 attgattggtattctgactcctgcttagtacaattttaggcacattatttaggctttgttacgtaatattggtcttattttatataggtgtgcaaatttt 295  Q
    |||||||| ||||||||| | |||||| |||||||||||| |  ||| |||| ||| || | ||||||||||| ||||||||||||||||| ||||||||    
T  8534567 attgattgttattctgacccttgcttattacaattttaggtatgttacttagacttcgtcatgtaatattggtgttattttatataggtgttcaaatttt 8534468  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 8640709 - 8640656
Alignment:
Q  19 aaattgcgggaagaaaatgaagttttttccttgtcccaacagattgtggaaagt 72  Q
    |||||| | |||||||||||||||||||||||||| |||| ||||||| |||||    
T  8640709 aaattgggagaagaaaatgaagttttttccttgtctcaacggattgtgcaaagt 8640656  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 8677574 - 8677535
Alignment:
Q  20 aattgcgggaagaaaatgaagttttttccttgtcccaaca 59  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  8677574 aattgcgggaagaaaatgaagttctttccttgtcacaaca 8677535  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 8549058 - 8549111
Alignment:
Q  244 ttaggctttgttacgtaatattggtcttattttatataggtgtgcaaattttaa 297  Q
    |||| |||||||| ||||||||||| ||||||| |||||| ||||||| |||||    
T  8549058 ttagcctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaa 8549111  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 9075311 - 9075364
Alignment:
Q  244 ttaggctttgttacgtaatattggtcttattttatataggtgtgcaaattttaa 297  Q
    |||| |||||||  |||||| || | ||||||||||||||||||||||||||||    
T  9075311 ttagactttgttgtgtaatactgttgttattttatataggtgtgcaaattttaa 9075364  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 9002353 - 9002289
Alignment:
Q  258 gtaatattggtcttattttatataggtgtgcaaattttaatctgcgagaaagaaatgaagatctt 322  Q
    ||||||||||| || |||| |||||||||||||| |||||  |||| |||  |||||||||||||    
T  9002353 gtaatattggtgttgttttgtataggtgtgcaaagtttaaattgcgtgaagaaaatgaagatctt 9002289  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 9442158 - 9442057
Alignment:
Q  196 attgattggtattctgactcctgcttagtacaattttaggcacattatttaggctttgttacgtaatattggtcttattttatataggtgtgcaaatttt 295  Q
    |||||||||||||||||| | |||||| |||||||||||| |  ||| |||| |||||||| ||||||||||| ||||||||||||||||||||||| ||    
T  9442158 attgattggtattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaaatatt 9442059  T
Q  296 aa 297  Q
    ||    
T  9442058 aa 9442057  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 48362698 - 48362797
Alignment:
Q  197 ttgattggtattctgactcctgcttagtacaattttaggcacattatttaggctttgttacgtaatattggtcttattttatataggtgtgcaaatttta 296  Q
    ||||||||| ||||||| ||||| || |||||||||||  |  ||| | || || ||||| |||||||| || ||| ||||||||||||||||||| |||    
T  48362698 ttgattggttttctgacccctgcgtattacaattttagttatgttactaagactatgttatgtaatattcgtgtta-tttatataggtgtgcaaatatta 48362796  T

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