View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12743_high_13 (Length: 324)
Name: NF12743_high_13
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12743_high_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 130 - 324
Target Start/End: Original strand, 12819336 - 12819530
Alignment:
| Q |
130 |
aaactcaacaggtcatgcaaagatatcagaaaagcaatataaggaacaatgtcaaaggaccacgacattcttcgtatgaatcagttatcattatccattg |
229 |
Q |
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| T |
12819336 |
aaactcaacaggtcctgcaaagatctcagaaaagcaatataaggaacaatgtcaaaggaccacggcattcttcgtatgaatcagttatcattatcaattg |
12819435 |
T |
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| Q |
230 |
aggtatgtatcatagagtactatgcagtattattcatatcgggtgcaatgatgagttatgaatttagtctcaagctgttaaattaaagtcataag |
324 |
Q |
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| T |
12819436 |
aggtatgtatcatagcgtactatgcagtattattcatatcgggtgcaatgatgagttatgaatttagtctcaagctgttaaattaaagtcataag |
12819530 |
T |
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Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 12819183 - 12819285
Alignment:
| Q |
19 |
atcgagagtgggaaaacattcaaagagagattttcttttagtatatagatatagaccatattttctgcactattttcttgaaaacaaaagttggtgaaag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12819183 |
atcgagagtgggaaaacattcaaagagagattttcttatagtatatagatatagaccatattttctgcactattttcttgaaaacaaaagttggtgaaag |
12819282 |
T |
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| Q |
119 |
caa |
121 |
Q |
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||| |
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| T |
12819283 |
caa |
12819285 |
T |
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