View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12743_high_14 (Length: 319)
Name: NF12743_high_14
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12743_high_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 5941682 - 5942000
Alignment:
| Q |
1 |
accataacattgattaataaaataatttgaatgattaaggcaggtgaggattaaataagagaaaattgagaacagaaataagagaaaattaactcattac |
100 |
Q |
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| T |
5941682 |
accataacattgattaataaaataatttgaatgattaaggcaggtgaggattaaataagagaaaattgagaacagaaataagagaaaattaactcattac |
5941781 |
T |
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| Q |
101 |
aacaacttcttatttatgttaccctaatatacaaaggaaaagataactcgtccggtacaatacattataacatcaataaaaattgtttataacactgtct |
200 |
Q |
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| T |
5941782 |
aacaactccttatttatgttaccctaatatacaaaggaaaagataattcgtccggtacaatacattataacatcaataaaaattgtttataacactgtct |
5941881 |
T |
|
| Q |
201 |
ccaaaatattaaattgaccatacaataatagtggaccaacattgataggttacatttcttgtagttttgtacatattaaaactaacattagctttaatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5941882 |
ccaaaatattaaattgaccatacaataatagtggaccaacattgataggttacatttcttgtagttttgtacatattaaaaccaacattagctttaatgt |
5941981 |
T |
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| Q |
301 |
acaccactttatttgaaac |
319 |
Q |
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||||||||||||||||||| |
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| T |
5941982 |
acaccactttatttgaaac |
5942000 |
T |
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