View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12743_high_15 (Length: 315)
Name: NF12743_high_15
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12743_high_15 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 42 - 315
Target Start/End: Complemental strand, 33026021 - 33025759
Alignment:
| Q |
42 |
gcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttac |
141 |
Q |
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| T |
33026021 |
gcgtgtttgacatgcgaagatgtttttaagcgaatttgg-atcagaaactaacgaattgaatgacttgcataggcatcgaagttgaatgaggagttttac |
33025923 |
T |
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| Q |
142 |
cgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagtggttgttgttagggttccggtggaggtaagagtgagttga |
241 |
Q |
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| T |
33025922 |
cgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagcggttgtagttagggttccggtggaggtaagagtgagttga |
33025823 |
T |
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| Q |
242 |
tgcgtcttcgttatgattgtttcctccatgagtgattgagaagaaatgacatcacttcgatcgaagttatcgcg |
315 |
Q |
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| T |
33025822 |
tgcgtc----------ttgtttcctccatgagtgattgagaagaaacgacatcacttcgatcgaagttatcgcg |
33025759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 44 - 277
Target Start/End: Complemental strand, 33019622 - 33019389
Alignment:
| Q |
44 |
gtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttaccg |
143 |
Q |
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| T |
33019622 |
gtgtttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgactgacttgcagaggcatcgaagttgaataaggatttttaccg |
33019523 |
T |
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| Q |
144 |
ggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagtggttgttgttagggttccggtggaggtaagagtgagttgatg |
243 |
Q |
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| T |
33019522 |
ggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcggagttgttgttgttagggttccggtgaaggtaagagtgagttgatg |
33019423 |
T |
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| Q |
244 |
cgtcttcgttatgattgtttcctccatgagtgat |
277 |
Q |
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| T |
33019422 |
cgtctttgttacgattgtttcctccatgagtgat |
33019389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 33037519 - 33037365
Alignment:
| Q |
41 |
cgcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagtttta |
140 |
Q |
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| T |
33037519 |
cgcgtgtttgacatgcgaagatgtttcttagcgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagtttta |
33037420 |
T |
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| Q |
141 |
ccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtgg |
195 |
Q |
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| T |
33037419 |
ccggaagtctgcatagaatttcagcgacgagatcaaacggaagagtgggtagtgg |
33037365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 304
Target Start/End: Complemental strand, 33023599 - 33023350
Alignment:
| Q |
48 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttaccgggag |
147 |
Q |
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| T |
33023599 |
ttgacatgcgaaagtgtttctttgcgaatacgggatcacacattaacgaattgaaggacttgcaaagacattgaagttgaaggaggagtttcacagggat |
33023500 |
T |
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| Q |
148 |
tctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagtggttgttgttagggttccggtggaggtaagagtgagttgatgcgtc |
247 |
Q |
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| T |
33023499 |
tctacaaaggatttcagcaaggagatcaaatggaagagttgttagtggcggagcggatgttgttagagttc-------ggtaagaatgaattgttgtatc |
33023407 |
T |
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| Q |
248 |
ttcgttatgattgtttcctccatgagtgattgagaagaaatgacatcacttcgatcg |
304 |
Q |
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| T |
33023406 |
tttgttgtgattgtttcctccatgagtgattgagaagaaactacattgcttcgatcg |
33023350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 2501533 - 2501458
Alignment:
| Q |
48 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaag |
123 |
Q |
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| T |
2501533 |
ttgacatacgaagatgtttctttgcgaatttaggatcagaaattaaagaattgaagaacttacaaaggcatcgaag |
2501458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 12217388 - 12217304
Alignment:
| Q |
48 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgag |
132 |
Q |
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| T |
12217388 |
ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgag |
12217304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 37758420 - 37758504
Alignment:
| Q |
42 |
gcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttg |
126 |
Q |
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| T |
37758420 |
gcgtggttgacatacgaagatgcttcttagcgaatttgggatccaagattaaagaattcaaggacttgcagaggcatcggagttg |
37758504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 24418155 - 24418235
Alignment:
| Q |
48 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaa |
128 |
Q |
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|||||| |||||| || || || ||||||||||||| ||| | ||| |||||||| |||||||| || || |||||||||| |
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| T |
24418155 |
ttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaa |
24418235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 25869469 - 25869541
Alignment:
| Q |
102 |
atgacttgcacaggcatcgaagttgaatgaggagttttaccgggagtctgcatagaatttcagcgatgagatc |
174 |
Q |
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| T |
25869469 |
atgacttgcaaatgcagcggagttgcatgaggaatttgatggggaatctgcataggatttcagcgatgagatc |
25869541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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