View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12743_high_16 (Length: 306)
Name: NF12743_high_16
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12743_high_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 36891525 - 36891230
Alignment:
| Q |
11 |
gcagagacatgcaaatttcatgtaataacctaaagttacaaaaaggctatatatataagcttatgacataagctaattccttctttttacatgctcaagt |
110 |
Q |
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| T |
36891525 |
gcagagacatgcaaatttcatgtaataacctaaagttacaaaaaggctatatatataagcttatgacataagctaattccttctttttacatgctcaagt |
36891426 |
T |
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| Q |
111 |
taagttattatcccttttggggaacaaatatctatgatgttgtatcagtgaagacacattaaatcatgtatcagttagttaagcatcaatcaaaggaata |
210 |
Q |
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| T |
36891425 |
taagttattatcccttttggggaacaaatatctatgatgttgtatcagtgaagacacattaaatcatgtatcagttagttaagcatcaatcaaaggaata |
36891326 |
T |
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| Q |
211 |
aagcnnnnnnnnnnnnnnnnnnnnnggaagaccgatggcattagaatccatttttatcgcataccgaatagagtggccatcaaccctatagagaag |
306 |
Q |
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| T |
36891325 |
aagcaaaaaaattaaacataaaaaaggaagaccgatggcattagaatccatttttatcgcataccgaatagagtggccatcaaccctatagagaag |
36891230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 36899716 - 36899683
Alignment:
| Q |
97 |
ttacatgctcaagttaagttattatcccttttgg |
130 |
Q |
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| T |
36899716 |
ttacatgctcaagttaagttattatcccatttgg |
36899683 |
T |
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