View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12743_high_2 (Length: 520)
Name: NF12743_high_2
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12743_high_2 |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 16 - 520
Target Start/End: Original strand, 32882357 - 32882861
Alignment:
| Q |
16 |
atcaaatttacagcaacaagaaacacaacatgcgagtgatatgaacactttcatgcgaaaacaacaaacgaattctcacaaccttgtacaacaatctcca |
115 |
Q |
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|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32882357 |
atcaaatttacagcaacaagaaacacaacatgcgggcaataagaacactttcatgcgaaaacaacaaatgaattctcacaaccttgtacaacaatctcca |
32882456 |
T |
|
| Q |
116 |
aacacctcggaacccacattcccctctttgtttcctaaaaatcctcgaaactcatcatcaacgattccttcactcacaccatgaatcaccatcacaagct |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32882457 |
aacacctcggaacccacattcccctcttagtttcctcaaaatcctcgaaactcatcatcaacgattccttcactcacaccatgattcaccatcacaagct |
32882556 |
T |
|
| Q |
216 |
tcgttcatccaaaaccttctcaaattccgcagagacaaacccacagaacaaatcgaacgagctcttaacctcactggaattcaccccgacaacaaccttg |
315 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32882557 |
tcgttaatccaaaaccttctcaaattccgcagagacaaacccacagaacaaatcgaacgagctcttaacctcactggaattcaccccaacaacaaccttg |
32882656 |
T |
|
| Q |
316 |
tcctcgaagttttgcaacggcatcgttctgattggaaaccagcgtttatattcttcaaatgggtctccaaaaccaacaactacacacccagtcgcgaagt |
415 |
Q |
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||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32882657 |
tcctcaaagttttacaacggcatcgttccgattggaaaccagcgtttatattcttcaaatgggtctccaaaaccaacaactacacacccagttgcgaagt |
32882756 |
T |
|
| Q |
416 |
gtacaacgagattatcaacattctcggtaaaatgaagtgttccaaagagttgcaccaagtgcttgatgaaatgtctcaaagaaaagaatttattaatgaa |
515 |
Q |
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| T |
32882757 |
gtacaacgagattatcaacattctcagtaaaatgaagtgtttcgaagagttacaccaagtgcttgatgaaatgtcgcaaagaaaagaatttattaatgaa |
32882856 |
T |
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| Q |
516 |
gaaac |
520 |
Q |
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||||| |
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| T |
32882857 |
gaaac |
32882861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 41 - 520
Target Start/End: Complemental strand, 25711920 - 25711442
Alignment:
| Q |
41 |
caacatgcgagtgatatgaacactttcatgcgaaaacaacaaacgaattctcacaaccttgtacaacaatctccaaacacctcggaacccacattcccct |
140 |
Q |
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||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25711920 |
caacatgcgagcaataagaacactttcatgcaaaaacaacaaacgaattctcacaaccttgtacaacaatctccaaacacctcggaacccacattcccct |
25711821 |
T |
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| Q |
141 |
ctttgtttcctaaaaatcctcgaaactcatcatcaacgattccttcactcacaccatgaatcaccatcacaagcttcgttcatccaaaaccttctcaaat |
240 |
Q |
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||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |
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| T |
25711820 |
cttcgtttcctcaaaatcctcgaaactcatcatca-cgattccttcactcacaccatgattcaccaccactagcttcgttcatccaaaaccttctcaaat |
25711722 |
T |
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| Q |
241 |
tccgcagagacaaacccacagaacaaatcgaacgagctcttaacctcactggaattcaccccgacaacaaccttgtcctcgaagttttgcaacggcatcg |
340 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
25711721 |
tccgcagagacaaacccacagaacaaatcgaacaagctcttaacctcattggaattcaccccaacaacaaccttgtcctccaagttttgcaacggcatcg |
25711622 |
T |
|
| Q |
341 |
ttctgattggaaaccagcgtttatattcttcaaatgggtctccaaaaccaacaactacacacccagtcgcgaagtgtacaacgagattatcaacattctc |
440 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25711621 |
ttccgattggaaaccagcgtttatattcttcaaatgggtctccaaaaccaacaactacacacccagttgcgaagtgtacaacgagattatcaacattctc |
25711522 |
T |
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| Q |
441 |
ggtaaaatgaagtgttccaaagagttgcaccaagtgcttgatgaaatgtctcaaagaaaagaatttattaatgaagaaac |
520 |
Q |
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| T |
25711521 |
ggtaaaatgaagtgtttcgaagagttacaccaagtgcttgatgaaatgtcgcaaagaaaagaatttattaatgaagaaac |
25711442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 9e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 239 - 520
Target Start/End: Complemental strand, 28087508 - 28087227
Alignment:
| Q |
239 |
attccgcagagacaaacccacagaacaaatcgaacgagctcttaacctcactggaattcaccccgacaacaaccttgtcctcgaagttttgcaacggcat |
338 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||||| |||||| ||||||||| |||||||||||||| |
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| T |
28087508 |
attccgcagagataaacccacagaacaaatcgaacgagctcttaatctcaccggaatccatcccgacagcaacctcgtcctcgaacttttgcaacggcat |
28087409 |
T |
|
| Q |
339 |
cgttctgattggaaaccagcgtttatattcttcaaatgggtctccaaaaccaacaactacacacccagtcgcgaagtgtacaacgagattatcaacattc |
438 |
Q |
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|| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||| |
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| T |
28087408 |
cggtccgattggaaaccagcgtttatattcttcaaatgggtcaccaaaaccaacaactacacacccagttgtgaagtgtacaatgagattattaacattc |
28087309 |
T |
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| Q |
439 |
tcggtaaaatgaagtgttccaaagagttgcaccaagtgcttgatgaaatgtctcaaagaaaagaatttattaatgaagaaac |
520 |
Q |
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| T |
28087308 |
ttggtaaaatgaagcgttttgaagagttacaccaagtgctcgacgaaatgtcacaaagaaaataatttatcaatgaagaaac |
28087227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 238 - 520
Target Start/End: Complemental strand, 35480588 - 35480307
Alignment:
| Q |
238 |
aattccgcagagacaaacccacagaacaaatcgaacgagctcttaacctcactggaattcaccccgacaacaaccttgtcctcgaagttttgcaacggca |
337 |
Q |
| |
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||||| ||||||||||||||| ||||||| | ||||||||| |||| ||||||||||| |||||||||| |||||| |||||||||||||||||||| || |
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| T |
35480588 |
aattctgcagagacaaacccaaagaacaatt-gaacgagcttttaatctcactggaatccaccccgacagcaacctcgtcctcgaagttttgcaacgaca |
35480490 |
T |
|
| Q |
338 |
tcgttctgattggaaaccagcgtttatattcttcaaatgggtctccaaaaccaacaactacacacccagtcgcgaagtgtacaacgagattatcaacatt |
437 |
Q |
| |
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||| || |||| |||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||| || |||||||||||| |||||||| || ||| |
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| T |
35480489 |
tcgatccaattgaaaaccagcgtttatattcttgaaaagggtcaccaaaacaaacaactacacaccccgttgcgaagtgtacactgagattattaaaatt |
35480390 |
T |
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| Q |
438 |
ctcggtaaaatgaagtgttccaaagagttgcaccaagtgcttgatgaaatgtctcaaagaaaagaatttattaatgaagaaac |
520 |
Q |
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| T |
35480389 |
gttggtaaaatgaagcattttgaagagttacaccaagtgctcgacgaaatgtcgcaaagaaaagaatttatcaatgaagaaac |
35480307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 424 - 520
Target Start/End: Original strand, 22341444 - 22341540
Alignment:
| Q |
424 |
agattatcaacattctcggtaaaatgaagtgttccaaagagttgcaccaagtgcttgatgaaatgtctcaaagaaaagaatttattaatgaagaaac |
520 |
Q |
| |
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||||||| |||||||| |||||||||||| ||| || |||| ||||||||||| || |||||||| ||||||||||||||||| ||||||||||| |
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| T |
22341444 |
agattattaacattcttggtaaaatgaagcgttttgaatagttacaccaagtgctcgacgaaatgtcgcaaagaaaagaatttatcaatgaagaaac |
22341540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 26723457 - 26723425
Alignment:
| Q |
208 |
cacaagcttcgttcatccaaaaccttctcaaat |
240 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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| T |
26723457 |
cacaagcttcattcatccaaaaccttctcaaat |
26723425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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