View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12743_high_3 (Length: 450)
Name: NF12743_high_3
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12743_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 4932079 - 4931643
Alignment:
| Q |
1 |
tctcatatcgcatgcgtggtcaagtaagcattcaccgtaatcaatccattagggatatcccactttaggatatctcttaaggaaatcagacgattcatac |
100 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
4932079 |
tctcatatcgcatgcgggttcaagtaagcattcaccgtaatcaatccattaaggatatctcactttaggatatctcttaagggaatcagacgattcatac |
4931980 |
T |
|
| Q |
101 |
gactttgattgaaggacg--agtgattatggttcatgagagctatatggtcttatatccaatgatactgatagattgactcaagagatcggggcggtatt |
198 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||| |||||||||||||| |
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| T |
4931979 |
gactttgattgaaggactcaagtgattatggttcatgagaactatatggtcttatatccaacgatactgatcgattgaatcaagaaatcggggcggtatt |
4931880 |
T |
|
| Q |
199 |
tgtgattggaaattcatttgcctcgattacatgggaatcattttgatattttgaagagtaattcttgcatgagatcgtagttttcgatcataactactca |
298 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4931879 |
tgtgagtggaaattcatttccctcgattacatgggaatcattttgatattttgaagagtaattcttgcatgagatcgtagttttcgatcataactactca |
4931780 |
T |
|
| Q |
299 |
aaaattcatgatatattaaaatgattaaaaggtgtccgtgtgcacaactgtggaggcttcggcatgggcgtatggtgtaaatgattgataagtaaatgat |
398 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4931779 |
aaaattcatgatacattaaaatgattaaaaggtgtccgtgtgcacaactgtggaggcttcggcatgggcgtatggtgtaaatgattgataagtaaatgat |
4931680 |
T |
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| Q |
399 |
tgtaatgttgaaagggtgaaaggtgaaatatgtgatg |
435 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4931679 |
tgtaatgttgaaagggtgaaaggtgaaatatgtgatg |
4931643 |
T |
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