View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12743_high_4 (Length: 446)
Name: NF12743_high_4
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12743_high_4 |
 | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 1963322 - 1962905
Alignment:
| Q |
1 |
tcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaaaatatcagacactcaaacttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
1963322 |
tcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttgtccaaccatgtcagacactcaaacttat |
1963223 |
T |
|
| Q |
101 |
tagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1963222 |
tagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggacc |
1963123 |
T |
|
| Q |
201 |
cttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatct |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963122 |
cttttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatct |
1963023 |
T |
|
| Q |
301 |
tgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963022 |
tgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
1962923 |
T |
|
| Q |
401 |
acttgagcaaatggaagt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1962922 |
acttgagcaaatggaagt |
1962905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 3 - 418
Target Start/End: Original strand, 2015109 - 2015524
Alignment:
| Q |
3 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaaaatatcagacactcaaacttatta |
102 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||| ||||||| |||||||||||| |||||||||||||| || |||||| |||||||||||| |
|
|
| T |
2015109 |
aatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacattcaaacttatta |
2015208 |
T |
|
| Q |
103 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
2015209 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcagtgcttctataggaccgt |
2015308 |
T |
|
| Q |
203 |
tttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttg |
302 |
Q |
| |
|
|||| ||||| | ||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | |||||||||||||| ||||||||||| |
|
|
| T |
2015309 |
tttcgatttctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaagattgactggatctatcttg |
2015408 |
T |
|
| Q |
303 |
agctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac |
402 |
Q |
| |
|
|||||| |||| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
2015409 |
agctagctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgcatgatgtttccttatctaac |
2015508 |
T |
|
| Q |
403 |
ttgagcaaatggaagt |
418 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2015509 |
ttgagcaaatagaagt |
2015524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 418
Target Start/End: Original strand, 2018492 - 2018907
Alignment:
| Q |
3 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaaaatatcagacactcaaacttatta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| || |||||||| ||| |||| |
|
|
| T |
2018492 |
aatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagacacttcaacccatta |
2018591 |
T |
|
| Q |
103 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
202 |
Q |
| |
|
|||||||||| ||| | ||| | ||||||||||| |||||||||||||| ||| | |||| |||||| || ||||| | ||||||||||||||| | |
|
|
| T |
2018592 |
tcatcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctataggacctt |
2018691 |
T |
|
| Q |
203 |
tttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttg |
302 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||| |
|
|
| T |
2018692 |
tttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctatcttg |
2018791 |
T |
|
| Q |
303 |
agctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac |
402 |
Q |
| |
|
|||| |||||| || |||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| |||| |
|
|
| T |
2018792 |
agcttggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttattcaac |
2018891 |
T |
|
| Q |
403 |
ttgagcaaatggaagt |
418 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2018892 |
ttgagcaaatagaagt |
2018907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 2 - 417
Target Start/End: Original strand, 2011709 - 2012124
Alignment:
| Q |
2 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaaaatatcagacactcaaacttatt |
101 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||| || || ||||||||| || ||| |
|
|
| T |
2011709 |
caatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatt |
2011808 |
T |
|
| Q |
102 |
agcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccc |
201 |
Q |
| |
|
|||||||||| |||| ||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| ||| |
|
|
| T |
2011809 |
agcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccc |
2011908 |
T |
|
| Q |
202 |
ttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatctt |
301 |
Q |
| |
|
|||| ||||| | ||||||||||| |||||||||||| || || || ||| |||| ||| || ||| | ||||||| ||||||||||||||||| |
|
|
| T |
2011909 |
atttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctatctt |
2012008 |
T |
|
| Q |
302 |
gagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
400 |
Q |
| |
|
|| ||| ||||||| | ||||| ||||| | || || || || |||| || ||||||||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
2012009 |
gaactatggtcaag-agatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcatcca |
2012107 |
T |
|
| Q |
401 |
acttgagcaaatggaag |
417 |
Q |
| |
|
|||| |||||| |||| |
|
|
| T |
2012108 |
acttaggcaaatagaag |
2012124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 84 - 261
Target Start/End: Complemental strand, 2433128 - 2432951
Alignment:
| Q |
84 |
cagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtc |
183 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||||||| |||||| |
|
|
| T |
2433128 |
cagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttccttcatctgtc |
2433029 |
T |
|
| Q |
184 |
attgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaaca |
261 |
Q |
| |
|
| ||||| |||||||||| |||| ||||| | ||||||||||| ||||||||||||| || |||| |||||| |||| |
|
|
| T |
2433028 |
agtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaacggtattttttaaca |
2432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 417
Target Start/End: Original strand, 2008094 - 2008509
Alignment:
| Q |
2 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaaaatatcagacactcaaacttatt |
101 |
Q |
| |
|
||||||| || || |||||||| || ||||| |||||||| ||||||||||| |||||||| | ||||| ||||| | ||||||||| || ||| |
|
|
| T |
2008094 |
caatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaaccaggccagacactccaagccatt |
2008193 |
T |
|
| Q |
102 |
agcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccc |
201 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| |||||||||| |||||| || |||| |||| ||| || ||| ||||||| || ||||||| |
|
|
| T |
2008194 |
agcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggaccc |
2008293 |
T |
|
| Q |
202 |
ttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatctt |
301 |
Q |
| |
|
| || ||||| ||||||||||||| |||||||||||| | || || || |||| || |||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
2008294 |
atctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctatctt |
2008393 |
T |
|
| Q |
302 |
gagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
400 |
Q |
| |
|
|||||| | ||||| ||||||| ||||| | || |||||||||||||||| ||||||||| | | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
2008394 |
gagctatgctcaag-aaatccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatcca |
2008492 |
T |
|
| Q |
401 |
acttgagcaaatggaag |
417 |
Q |
| |
|
||| |||||| |||| |
|
|
| T |
2008493 |
gcttaggcaaatagaag |
2008509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 400
Target Start/End: Complemental strand, 1968921 - 1968523
Alignment:
| Q |
2 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaaaatatcagacactcaaacttatt |
101 |
Q |
| |
|
|||||||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| | ||||| ||||| | ||||||||| || ||| |
|
|
| T |
1968921 |
caatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccatt |
1968822 |
T |
|
| Q |
102 |
agcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccc |
201 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||||| |||||| ||| |
|
|
| T |
1968821 |
agcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggtccc |
1968722 |
T |
|
| Q |
202 |
ttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatctt |
301 |
Q |
| |
|
| || | ||||||||||||||||| | |||||||||| || || || || || | | |||| ||| |||||| ||||||||||||||||| |
|
|
| T |
1968721 |
atctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatctt |
1968622 |
T |
|
| Q |
302 |
gagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
400 |
Q |
| |
|
|||||| | ||||| | ||||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
1968621 |
gagctacgctcaag-agatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca |
1968523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 2004714 - 2004952
Alignment:
| Q |
2 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaaaatatcagacactcaaacttatt |
101 |
Q |
| |
|
||||||||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| | ||||| ||||| || | ||||| || ||| || |
|
|
| T |
2004714 |
caatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgtttatccaaccatgttagacattccaacccatg |
2004813 |
T |
|
| Q |
102 |
agcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccc |
201 |
Q |
| |
|
| | ||||||| || || || || |||| ||||||||||||| ||||||| || |||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
2004814 |
attagcatcaccggaactttctatcgtcgggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggaccc |
2004913 |
T |
|
| Q |
202 |
ttttcaatttccaggaagctattaattagaacaccatca |
240 |
Q |
| |
|
| || ||||| ||||||||||||| |||||||||||| |
|
|
| T |
2004914 |
atctccatttctaggaagctattaacaagaacaccatca |
2004952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 1964985 - 1964747
Alignment:
| Q |
2 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaaaatatcagacactcaaacttatt |
101 |
Q |
| |
|
|||||||||| || |||||||| |||||||| || ||||| ||||||||||||||||||| |||||||||| || || ||||||||| || ||| |
|
|
| T |
1964985 |
caatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatt |
1964886 |
T |
|
| Q |
102 |
agcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccc |
201 |
Q |
| |
|
||||||| |||| ||||| ||| | ||| ||||||||||||| ||||||| | |||| |||||||||| |||||| ||||| |||||| ||| |
|
|
| T |
1964885 |
agcatcacggtcagaacatgttactgtatcgatgatgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtccc |
1964786 |
T |
|
| Q |
202 |
ttttcaatttccaggaagctattaattagaacaccatca |
240 |
Q |
| |
|
|||| ||||| | ||||||||||| |||||||||||| |
|
|
| T |
1964785 |
atttccatttctaagaagctattaacaagaacaccatca |
1964747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 417
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
| Q |
277 |
ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg |
375 |
Q |
| |
|
||||||| ||||||||| |||||||||| | || ||| || | |||| ||||| || || |||||||||||||||| |||||| |||| | ||||| |
|
|
| T |
2004989 |
ttgtaagcttgacttgacctatcttgagttgggctcatgaga-tccctgccatggattggtacacaacctggtatttttataggcactggtatatctcca |
2005087 |
T |
|
| Q |
376 |
tactcacatgaagtttccttatccaacttgagcaaatggaag |
417 |
Q |
| |
|
||||||||||| ||||| | ||||||||| |||||| |||| |
|
|
| T |
2005088 |
tactcacatgatgtttcttcatccaacttaggcaaatagaag |
2005129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 5902495 - 5902084
Alignment:
| Q |
1 |
tcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaaaatatcagacactcaaacttat |
100 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| | || || |||||||||| | |
|
|
| T |
5902495 |
tcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttatgtaaccatgtcagacactcca------ |
5902402 |
T |
|
| Q |
101 |
tagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacc |
200 |
Q |
| |
|
|| ||| || ||||||| |||| |||||||||||||||||||| || |||||| | |||| |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
5902401 |
taccattattaccagattctgttcttgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggacc |
5902302 |
T |
|
| Q |
201 |
cttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||| | || |||| ||| || || |||||| ||||| ||||||||||| || ||||||||| |
|
|
| T |
5902301 |
tttttcaatttccaggaagctattaataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgatctatct |
5902202 |
T |
|
| Q |
301 |
tgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
400 |
Q |
| |
|
|||||| || ||| | |||||||||| |||| || |||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
5902201 |
tgagcttgggcaacgagatcccgaccacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatcca |
5902102 |
T |
|
| Q |
401 |
acttgagcaaatggaagt |
418 |
Q |
| |
|
| |||||||||| ||||| |
|
|
| T |
5902101 |
atttgagcaaatagaagt |
5902084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 5905975 - 5905918
Alignment:
| Q |
5 |
tttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaagg |
62 |
Q |
| |
|
|||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
5905975 |
tttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaagg |
5905918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 22096 - 22055
Alignment:
| Q |
16 |
gaaagtgtgccaccactaccaaaagaaacatacaaaactgaa |
57 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
22096 |
gaaagtgttccaccacttccaaaagaaacatacaaaactgaa |
22055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 2842 - 2805
Alignment:
| Q |
16 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
53 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2842 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
2805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 57385 - 57348
Alignment:
| Q |
16 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
53 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
57385 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
57348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 15459 - 15496
Alignment:
| Q |
16 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
53 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
15459 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
15496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
| Q |
356 |
taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
417 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
18189870 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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