View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12743_high_5 (Length: 438)
Name: NF12743_high_5
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12743_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 4932476 - 4932183
Alignment:
| Q |
1 |
caatggaacctcctagtccaaaatctgaaaaaccaccaaagaattggtttagacgttggtgttgttgttcctgcatgtcaggttcaccttgttactaata |
100 |
Q |
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| T |
4932476 |
caatggaacctcctaatccaaaatctgaaaaaccaccaaagaattggtttagacgttggtgttgttgttcctgcttgtcaggttcaccttgttactaata |
4932377 |
T |
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| Q |
101 |
aaaggtcttgaaatggtgttgaaaaagaaattatcaagtgacaatgcctctcaattataatgtttgcctaatcaaatatttggattcggcaccccgacag |
200 |
Q |
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| T |
4932376 |
aaaggtcttgaaatggtgttgaaaaagaaattatcaagtgacaatgcgtctcaattataatgtctgcctaatcaaatatttggattcggcaccccgacag |
4932277 |
T |
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| Q |
201 |
ccatggattcttagcattcacgcgattgaaatgttggtggttgttccatcaagatcgaacgatccagattcaagtttggtattttcaatcataa |
294 |
Q |
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| T |
4932276 |
ccagggattcttagcattcacgcgattgaaatgttggtggttgttccatcaagatcaaacgatccagattcaagtttggtattttcaatcataa |
4932183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 4932167 - 4932104
Alignment:
| Q |
341 |
taccctgcttggttgaatgcagaatccttgcgaaagaaatctgaattccaagtatttggagaca |
404 |
Q |
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| T |
4932167 |
taccctgcttggttgaatgcagaatccttgcatgagaagtctgaattccaagtatttggagaca |
4932104 |
T |
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