View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12743_high_6 (Length: 398)

Name: NF12743_high_6
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12743_high_6
NF12743_high_6
[»] chr8 (2 HSPs)
chr8 (38-211)||(12933811-12933984)
chr8 (151-188)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (38-211)||(28608621-28608794)
chr4 (61-211)||(14177081-14177231)
chr4 (150-203)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (181-218)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (181-218)||(796698-796735)
chr6 (181-218)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (181-218)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 12933984 - 12933811
Alignment:
Q  38 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 136  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  12933984 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 12933885  T
Q  137 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 211  Q
    || ||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933884 ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  151 ggttgctccatataaatctcctcttccaaatctccatg 188  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 28608621 - 28608794
Alignment:
Q  38 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 136  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  28608621 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 28608720  T
Q  137 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 211  Q
    ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608721 ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  61 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 159  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  160 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 211  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  150 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 203  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  181 tctccatgaagaaatgcagttttcacatccaactgctc 218  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  181 tctccatgaagaaatgcagttttcacatccaactgctc 218  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  181 tctccatgaagaaatgcagttttcacatccaactgctc 218  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  181 tctccatgaagaaatgcagttttcacatccaactgctc 218  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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