View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12743_high_7 (Length: 386)

Name: NF12743_high_7
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12743_high_7
NF12743_high_7
[»] chr6 (3 HSPs)
chr6 (1-259)||(4931061-4931334)
chr6 (320-386)||(4930911-4930977)
chr6 (279-324)||(4931001-4931046)
[»] chr5 (2 HSPs)
chr5 (45-114)||(5173785-5173854)
chr5 (72-144)||(17890713-17890785)
[»] chr2 (1 HSPs)
chr2 (58-90)||(9436122-9436154)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 4931334 - 4931061
Alignment:
Q  1 ttagcgtatgattcgtattacggtgagtatgtcagagtgatagcgatctaccttgacttttcaaaaactaaactttgtagtttctgtaaaatcacggtag 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||| ||||||||||||| |    
T  4931334 ttagcgtatgattcgtattacggtgagtatgtcagagtgacagcgatctacagtgacttttcaaaaactacactttgtagtttccgtaaaatcacggtgg 4931235  T
Q  101 gtca---------------ccgtgattctaacatactcgcagggataccaaatatacactaagaatttacacacatgtgagatgtggcgcatcccttcac 185  Q
     |||               |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4931234 atcatcccttcacaaatcaccgtgattctaacatacttgcaggaataccaaatatacactaagaatttacacacatgtgagatgtggcacatcccttcac 4931135  T
Q  186 aaattagtttatgttttatgatatctttgttataaatataaggttttaatgcatttttggtcccctaattcaac 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4931134 aaattagtttatgttttatgatatctttgttataaatataaggttttaatgcatttttggtcccctaattcaac 4931061  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 4930977 - 4930911
Alignment:
Q  320 ttttagagtcatttttaccgatgtgggaactcttaataggctttttatgtcatggatatccagtgta 386  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4930977 ttttggagtcatttttaccgatgtgggaactcttaataggctttttatgtcatggatatccggtgta 4930911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 4931046 - 4931001
Alignment:
Q  279 tatccccattttaaaaccattttttattcctctaacttcactttta 324  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  4931046 tatccccattttaaaacaattttttattcctctaacttcactttta 4931001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 5173854 - 5173785
Alignment:
Q  45 gatctaccttgacttttcaaaaactaaactttgtagtttctgtaaaatcacggtaggtcaccgtgattct 114  Q
    |||||||| ||| |||| |||| ||| | ||||||| ||||||||||||||||||| |||||||||||||    
T  5173854 gatctaccgtgatttttaaaaatctacattttgtagcttctgtaaaatcacggtagatcaccgtgattct 5173785  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 17890785 - 17890713
Alignment:
Q  72 actttgtagtttctgtaaaatcacggtaggtcaccgtgattctaacatactcgcagggataccaaatatacac 144  Q
    ||||| |||||| ||||||||||| || | ||||||||||||| |||||| | | | ||||||||| ||||||    
T  17890785 actttatagtttatgtaaaatcacagtggatcaccgtgattctgacatacccacggtgataccaaacatacac 17890713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 9436154 - 9436122
Alignment:
Q  58 ttttcaaaaactaaactttgtagtttctgtaaa 90  Q
    ||||||||||||| |||||||||||||||||||    
T  9436154 ttttcaaaaactacactttgtagtttctgtaaa 9436122  T

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