View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12743_high_8 (Length: 363)

Name: NF12743_high_8
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12743_high_8
NF12743_high_8
[»] chr4 (5 HSPs)
chr4 (154-353)||(54641250-54641449)
chr4 (184-353)||(54641620-54641789)
chr4 (155-353)||(54938074-54938271)
chr4 (1-75)||(54641079-54641153)
chr4 (1-49)||(54642474-54642522)
[»] chr7 (2 HSPs)
chr7 (155-353)||(13078238-13078436)
chr7 (155-231)||(6082221-6082297)
[»] chr3 (3 HSPs)
chr3 (155-353)||(39984048-39984246)
chr3 (155-222)||(35389071-35389138)
chr3 (155-219)||(2386599-2386663)
[»] chr2 (3 HSPs)
chr2 (155-353)||(14685264-14685462)
chr2 (155-353)||(40422088-40422286)
chr2 (155-353)||(21307120-21307314)
[»] chr1 (5 HSPs)
chr1 (155-231)||(10583719-10583795)
chr1 (155-231)||(49123075-49123151)
chr1 (1-49)||(16890225-16890273)
chr1 (155-210)||(23541321-23541376)
chr1 (1-49)||(34996546-34996594)
[»] scaffold0227 (1 HSPs)
scaffold0227 (156-231)||(12038-12113)
[»] chr6 (1 HSPs)
chr6 (155-231)||(18132106-18132182)
[»] chr5 (2 HSPs)
chr5 (155-222)||(29526368-29526435)
chr5 (161-231)||(39701944-39702014)
[»] chr8 (1 HSPs)
chr8 (1-47)||(21661114-21661160)
[»] scaffold0026 (1 HSPs)
scaffold0026 (155-219)||(80522-80586)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 154 - 353
Target Start/End: Original strand, 54641250 - 54641449
Alignment:
Q  154 aaaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641250 aaaagaatcaccttgtcctcaaggtgagggataacagaagtgtccaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaa 54641349  T
Q  254 cttatgccttgatcatatactctgtttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641350 cttatgccttgatcatatactctgtttgtagtgatatttttgataaaaaaatacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 54641449  T

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Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 184 - 353
Target Start/End: Original strand, 54641620 - 54641789
Alignment:
Q  184 ataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaacttatgccttgatcatatactctgtttgta 283  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54641620 ataacaaaagtgtccaccagggtcccataacttgaagtataatgatagagcgatatgtgaatcatgcaaacttatgccttgatcatatactctgtttgta 54641719  T
Q  284 gtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 353  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641720 gtgatatttttgataaaaaaatacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 54641789  T

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Target: chr4; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 155 - 353
Target Start/End: Original strand, 54938074 - 54938271
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 254  Q
    ||||| ||||||| |||||||||||| ||||| || |||||| |||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  54938074 aaagattcaccttatcctcaaggtgaaggatatcataagtgtccacctgggtcccataact-gaagtataatgacagagcgatgtgtgaatcatgcaaac 54938172  T
Q  255 ttatgccttgatcatatactctgtttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 353  Q
    ||||||| ||||||||||||||||||||||||||||||||||        ||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  54938173 ttatgccctgatcatatactctgtttgtagtgatatttttgagaaaaaaatactggatgattgatgttgtggtgcccatagtagtcccccttatctctg 54938271  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 54641079 - 54641153
Alignment:
Q  1 taaaatgcctatcgacattgtccttcagatcccttatttatccagtaaccagtccccaagtatttcccctgttcc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54641079 taaaatgcctatcgacattgtccttcagatcccttatttatccagcaaccagtccccaagtatttcccctgttcc 54641153  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54642474 - 54642522
Alignment:
Q  1 taaaatgcctatcgacattgtccttcagatcccttatttatccagtaac 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54642474 taaaatgcctatcgacattgtccttcagatcccttatttatccagtaac 54642522  T

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Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 155 - 353
Target Start/End: Complemental strand, 13078436 - 13078238
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 254  Q
    ||||| |||||||||||||||||||| ||||| || |||||| |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  13078436 aaagattcaccttgtcctcaaggtgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaac 13078337  T
Q  255 ttatgccttgatcatatactctgtttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 353  Q
    ||||||||||||||||||| |||||||| ||||||||||| |        |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13078336 ttatgccttgatcatataccctgtttgtggtgatattttttagcaaaaaatacaggatgattgatgtcgtggtgcccacagtagttccccttatctctg 13078238  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 6082297 - 6082221
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 231  Q
    ||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  6082297 aaagattcaccttgtcctcaaggtgaaggataacataagtgtccaccagggtcccataacttgaagtagagtgacag 6082221  T

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Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 155 - 353
Target Start/End: Original strand, 39984048 - 39984246
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 254  Q
    ||||| |||||||||||||||||||| ||||| || |||||| |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  39984048 aaagattcaccttgtcctcaaggtgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaac 39984147  T
Q  255 ttatgccttgatcatatactctgtttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 353  Q
    ||||||||||||||||||| |||||||| ||||||||||| |        |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39984148 ttatgccttgatcatataccctgtttgtggtgatattttttagcaaaaaatacaggatgattgatgtcgtggtgcccacagtagttccccttatctctg 39984246  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 35389138 - 35389071
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagta 222  Q
    ||||| |||||||||||||||| ||| |||||||| |||||| ||||||| |||||||||||||||||    
T  35389138 aaagattcaccttgtcctcaagttgaaggataacataagtgtccaccaggatcccataacttgaagta 35389071  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 2386599 - 2386663
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaa 219  Q
    ||||| |||||||||||||||||||| ||||| || |||||| |||||| ||||||||| |||||    
T  2386599 aaagattcaccttgtcctcaaggtgaaggatagcataagtgtccaccagagtcccataagttgaa 2386663  T

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Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 155 - 353
Target Start/End: Complemental strand, 14685462 - 14685264
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 254  Q
    ||||| |||||||||||||||||||| ||||| || |||||| |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  14685462 aaagattcaccttgtcctcaaggtgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaac 14685363  T
Q  255 ttatgccttgatcatatactctgtttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 353  Q
    ||||||||||||||||||| |||||||| ||||||||||| |        |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14685362 ttatgccttgatcatataccctgtttgtggtgatattttttagcaaaaaatacaggatgattgatgtcgtggtgcccacagtagttccccttatctctg 14685264  T

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Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 155 - 353
Target Start/End: Complemental strand, 40422286 - 40422088
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 254  Q
    ||||| |||||||||||||||||||| ||||| || |||||| |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  40422286 aaagattcaccttgtcctcaaggtgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaac 40422187  T
Q  255 ttatgccttgatcatatactctgtttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 353  Q
    ||||||||||||||||||| |||||||| ||||||||||| |        |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40422186 ttatgccttgatcatataccctgtttgtggtgatattttttagcaaaaaatacaggatgattgatgtcgtggtgcccacagtagttccccttatctctg 40422088  T

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Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 155 - 353
Target Start/End: Complemental strand, 21307314 - 21307120
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 254  Q
    ||||| |||||||||||||||||||| |||    | |||||| |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  21307314 aaagattcaccttgtcctcaaggtgaagga----ataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaac 21307219  T
Q  255 ttatgccttgatcatatactctgtttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 353  Q
    ||||||||||||||||||| |||||||| ||||||||||| |        |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21307218 ttatgccttgatcatataccctgtttgtggtgatattttttagcaaaaaatacaggatgattgatgtcgtggtgcccacagtagttccccttatctctg 21307120  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 10583795 - 10583719
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 231  Q
    ||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  10583795 aaagattcaccttgtcctcaaggtgaaggataacataagtgtccaccagggtcccataacttgaagtagagtgacag 10583719  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 49123151 - 49123075
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 231  Q
    ||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  49123151 aaagattcaccttgtcctcaaggtgaaggataacataagtgtccaccagggtcccataacttgaagtagagtgacag 49123075  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16890225 - 16890273
Alignment:
Q  1 taaaatgcctatcgacattgtccttcagatcccttatttatccagtaac 49  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16890225 taaaatgcctatcgacattgtccttaagatcccttatttatccagtaac 16890273  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 23541321 - 23541376
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtccca 210  Q
    ||||| |||| ||||||||||||| | |||||||| |||||| |||||||||||||    
T  23541321 aaagattcacgttgtcctcaaggtaaaggataacataagtgtccaccagggtccca 23541376  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34996594 - 34996546
Alignment:
Q  1 taaaatgcctatcgacattgtccttcagatcccttatttatccagtaac 49  Q
    |||||||||||  ||||||||||||||||| || |||||||| ||||||    
T  34996594 taaaatgcctactgacattgtccttcagattccctatttatctagtaac 34996546  T

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Target: scaffold0227 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 12113 - 12038
Alignment:
Q  156 aagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 231  Q
    |||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  12113 aagattcaccttgtcctcaaggtgaaggataacataagtgtccaccagggtcccataacttgaagtagagtgacag 12038  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 18132106 - 18132182
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 231  Q
    ||||| |||||||||||||||||||| |||||| | |||||| ||||||||||||||||||||||||| | ||||||    
T  18132106 aaagattcaccttgtcctcaaggtgaaggataaaataagtgtccaccagggtcccataacttgaagtagagtgacag 18132182  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 29526368 - 29526435
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagta 222  Q
    ||||| |||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||||    
T  29526368 aaagattcaccttgtcctcaaggtgaaggatgacataagtgtccaccagggtcccataacttgaagta 29526435  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 39701944 - 39702014
Alignment:
Q  161 tcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 231  Q
    |||||||||||||||||||| |||||| | |||||| ||||||||||||| ||||||||||| ||||||||    
T  39701944 tcaccttgtcctcaaggtgaaggataatataagtgtccaccagggtcccaaaacttgaagtacaatgacag 39702014  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21661160 - 21661114
Alignment:
Q  1 taaaatgcctatcgacattgtccttcagatcccttatttatccagta 47  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||    
T  21661160 taaaatgcctactgacattgtccttcagatcccttatttatccagta 21661114  T

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Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 80586 - 80522
Alignment:
Q  155 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaa 219  Q
    ||||| |||||||||||||||||||| ||| || | |||||| ||||| ||||||||||||||||    
T  80586 aaagattcaccttgtcctcaaggtgaaggacaagataagtgtccaccatggtcccataacttgaa 80522  T

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