View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12743_low_1 (Length: 393)

Name: NF12743_low_1
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12743_low_1
NF12743_low_1
[»] chr8 (10 HSPs)
chr8 (28-175)||(17312422-17312569)
chr8 (28-174)||(17259802-17259948)
chr8 (197-337)||(41092171-41092315)
chr8 (28-175)||(17335684-17335831)
chr8 (229-298)||(35759183-35759252)
chr8 (229-298)||(41348179-41348248)
chr8 (230-298)||(30272134-30272202)
chr8 (222-298)||(36935659-36935735)
chr8 (238-287)||(35387420-35387469)
chr8 (238-299)||(42111558-42111619)
[»] scaffold0155 (1 HSPs)
scaffold0155 (191-374)||(17332-17519)
[»] chr2 (3 HSPs)
chr2 (196-374)||(16426551-16426733)
chr2 (198-374)||(40992222-40992402)
chr2 (238-298)||(29921480-29921540)
[»] chr4 (16 HSPs)
chr4 (198-374)||(31634103-31634283)
chr4 (231-298)||(49399506-49399573)
chr4 (222-291)||(39413573-39413642)
chr4 (203-298)||(52758654-52758753)
chr4 (222-291)||(11680304-11680373)
chr4 (222-291)||(11688583-11688652)
chr4 (205-291)||(12590154-12590244)
chr4 (222-291)||(25655590-25655659)
chr4 (238-291)||(53289517-53289570)
chr4 (335-374)||(34372113-34372152)
chr4 (222-291)||(46764280-46764349)
chr4 (222-298)||(3619026-3619102)
chr4 (198-291)||(31910554-31910651)
chr4 (251-295)||(54007629-54007673)
chr4 (246-291)||(47523270-47523315)
chr4 (251-295)||(54007549-54007593)
[»] chr7 (7 HSPs)
chr7 (198-337)||(41224748-41224891)
chr7 (198-337)||(29314581-29314724)
chr7 (229-298)||(44896081-44896150)
chr7 (198-265)||(29007176-29007247)
chr7 (198-291)||(29006347-29006444)
chr7 (238-299)||(33687693-33687754)
chr7 (335-371)||(32904571-32904607)
[»] chr1 (3 HSPs)
chr1 (269-374)||(45065267-45065372)
chr1 (222-299)||(32538446-32538523)
chr1 (193-299)||(49611503-49611613)
[»] chr6 (5 HSPs)
chr6 (198-298)||(1034721-1034825)
chr6 (205-291)||(10608271-10608361)
chr6 (236-299)||(930966-931029)
chr6 (222-299)||(28534793-28534870)
chr6 (229-299)||(18605036-18605106)
[»] chr3 (5 HSPs)
chr3 (198-299)||(38741263-38741368)
chr3 (198-298)||(46719661-46719765)
chr3 (229-299)||(26837140-26837210)
chr3 (238-299)||(37999508-37999569)
chr3 (238-299)||(46739661-46739721)
[»] scaffold0180 (1 HSPs)
scaffold0180 (238-299)||(23035-23096)
[»] chr5 (2 HSPs)
chr5 (229-299)||(42654870-42654940)
chr5 (335-374)||(4821105-4821144)
[»] scaffold0175 (1 HSPs)
scaffold0175 (248-299)||(26316-26365)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 17312422 - 17312569
Alignment:
Q  28 ttggaaagagggaacttgtgaggtttatatagtgcgtagggtcaggtttgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaatt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17312422 ttggaaagagggaacttgtgaggtttatatagtgcgtagggtcaggtttgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaact 17312521  T
Q  128 aaaataaaaccgttaacgcgttttctttctaaataaggcggtgtgaat 175  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||||||    
T  17312522 aaaataaaacggttgacgcgttctctttctaaataaggcggtgtgaat 17312569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 17259802 - 17259948
Alignment:
Q  28 ttggaaagagggaacttgtgaggtttatatagtgcgtagggtcaggtttgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaatt 127  Q
    ||||||||||||||||| ||||| |||||||| | || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17259802 ttggaaagagggaacttatgaggcttatatagagggtggggtcaagtttgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaact 17259901  T
Q  128 aaaataaaaccgttaacgcgttttctttctaaataaggcggtgtgaa 174  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  17259902 aaaataaaacggttaacgcgtttcctttctaaataaggcggtgtgaa 17259948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 197 - 337
Target Start/End: Original strand, 41092171 - 41092315
Alignment:
Q  197 tggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctt 292  Q
    ||||| |||||||||||||||||||||    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41092171 tggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctt 41092270  T
Q  293 tcaacacactannnnnnncttcatcatcttccaccaccatccttc 337  Q
    |||||||||||       |||||||||||||||||||||||||||    
T  41092271 tcaacacactatttttttcttcatcatcttccaccaccatccttc 41092315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 17335684 - 17335831
Alignment:
Q  28 ttggaaagagggaacttgtgaggtttatatagtgcgtagggtcaggtttgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaatt 127  Q
    ||||||||| ||||||| ||||| |||||||| | |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17335684 ttggaaagacggaacttatgaggcttatatagagggaggggtcaagtttgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaact 17335783  T
Q  128 aaaataaaaccgttaacgcgttttctttctaaataaggcggtgtgaat 175  Q
    ||||| |||| ||| ||||||| ||||||||||||||||| |||||||    
T  17335784 aaaattaaacggttgacgcgttctctttctaaataaggcgctgtgaat 17335831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 35759252 - 35759183
Alignment:
Q  229 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 298  Q
    |||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  35759252 caccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 35759183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 41348179 - 41348248
Alignment:
Q  229 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 298  Q
    |||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  41348179 caccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 41348248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 30272134 - 30272202
Alignment:
Q  230 accatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 298  Q
    ||||||| ||||||| |||||||||||| |||||||||||| |||||||||||| ||| ||| ||||||    
T  30272134 accataggaaagttaatttttaaccattagattaaatagggtacacaattttattatgatctctcaaca 30272202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 36935659 - 36935735
Alignment:
Q  222 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 298  Q
    ||||| |||||||  |||||||| |||||||  ||| |||||||||||| |||||||||||||||| ||| ||||||    
T  36935659 tttttttcaccatgaaaaagttaatttttaataattagattaaatagggtacacaattttatcatgatctctcaaca 36935735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 35387469 - 35387420
Alignment:
Q  238 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatg 287  Q
    ||||||||||||| |||||||||||| ||||| |||||| ||||||||||    
T  35387469 aaagttagtttttgaccatttgattagataggaaacacacttttatcatg 35387420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 42111558 - 42111619
Alignment:
Q  238 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    ||||||||||||| ||||||  |||| |||||||| | |||||||||||||||| |||||||    
T  42111558 aaagttagtttttgaccattaaattagatagggaatataattttatcatggtctctcaacac 42111619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 191 - 374
Target Start/End: Original strand, 17332 - 17519
Alignment:
Q  191 ataagatggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcat 286  Q
    |||| |||||| |||||||||||| ||||||||    |||| |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17332 ataatatggtgccatttaatttggaaaaggcttgttttttcccaccatgggaaagttagtttttaaccatttgatcaaatagggaacacaattttatcat 17431  T
Q  287 ggtctttcaacacactannnnnnncttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 374  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432 ggtctttcaacacactatttttttcttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 17519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 196 - 374
Target Start/End: Original strand, 16426551 - 16426733
Alignment:
Q  196 atggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    |||||| |||||||||||||||||||||    |||| |||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  16426551 atggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttaatttttaaccatttgattaagtagggaatacaattttatcatggtct 16426650  T
Q  292 ttcaacacactannnnnnncttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 374  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16426651 ttcaacacactatttttttcttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 16426733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 198 - 374
Target Start/End: Original strand, 40992222 - 40992402
Alignment:
Q  198 ggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 293  Q
    |||| |||||||||||||||||| ||    ||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40992222 ggtgccatttaatttgggaaaggtttgttttttcctaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 40992321  T
Q  294 caacacactannnnnnncttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 374  Q
     |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40992322 taacacactatttttttcttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 40992402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 29921540 - 29921480
Alignment:
Q  238 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 298  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||| ||||||| ||||||    
T  29921540 aaagttagtttttaaccattaaattaaatagggtacacaattttataatggtctctcaaca 29921480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 198 - 374
Target Start/End: Original strand, 31634103 - 31634283
Alignment:
Q  198 ggtgtcatttaatttgggaaaggctt---tttctc-accatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 293  Q
    |||| ||||||||||| |||||||||   ||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31634103 ggtgccatttaatttgcgaaaggcttatttttttctaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 31634202  T
Q  294 caacacactannnnnnncttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 374  Q
    |||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31634203 caacacgctatttttttcttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 31634283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 49399573 - 49399506
Alignment:
Q  231 ccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 298  Q
    |||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||| ||||||    
T  49399573 ccataggaaagttagtttttaaccattagattaaatagggtatacaattttatcatggtctctcaaca 49399506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 39413642 - 39413573
Alignment:
Q  222 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    |||||| |||||||| |||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||    
T  39413642 tttttcccaccataggaaagttagtttttaaccattggattaagtagagaacataattttatcatggtct 39413573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 298
Target Start/End: Complemental strand, 52758753 - 52758654
Alignment:
Q  203 catttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 298  Q
    |||||||||||||||| |||    |||||||| ||| | |||||||||||||  ||||| |||||||||||||||||||||||| ||| |||| ||||||    
T  52758753 catttaatttgggaaatgctagttttttctcatcatgggaaagttagtttttggccattagattaaatagggaacacaattttaccatagtctctcaaca 52758654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 11680304 - 11680373
Alignment:
Q  222 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    |||||| |||||| | ||||||||||||| |||||| |||||||||||||||||||| |||| |||||||    
T  11680304 tttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtct 11680373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 11688583 - 11688652
Alignment:
Q  222 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    |||||| |||||| | ||||||||||||| |||||| |||||||||||||||||||| |||| |||||||    
T  11688583 tttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtct 11688652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 12590244 - 12590154
Alignment:
Q  205 tttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    ||||||||||||||||||    ||||  |||||| | ||||||||||||| |||||| |||||||||||||||||||| |||| |||||||    
T  12590244 tttaatttgggaaaggctagtttttttccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtct 12590154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 25655659 - 25655590
Alignment:
Q  222 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    |||||| |||||| | ||||||||||||| |||||| ||||||||||| |||||||| |||| |||||||    
T  25655659 tttttcccaccatgggaaagttagtttttgaccattagattaaataggaaacacaatgttattatggtct 25655590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 53289517 - 53289570
Alignment:
Q  238 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    ||||||| ||||||| |||| |||||||||||| ||||||||||||||||||||    
T  53289517 aaagttaatttttaatcattagattaaatagggtacacaattttatcatggtct 53289570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 34372152 - 34372113
Alignment:
Q  335 ttcacccgtttttcctcttctcatttcttcaactaagatc 374  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  34372152 ttcacccatttttcctcttctcatttcttcaactaagatc 34372113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 46764280 - 46764349
Alignment:
Q  222 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    |||||| |||||| | ||||||||||||| ||||||  |||||||||| |||||||| |||| |||||||    
T  46764280 tttttcccaccatgggaaagttagtttttgaccattaaattaaataggaaacacaatgttattatggtct 46764349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 3619026 - 3619102
Alignment:
Q  222 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 298  Q
    |||| |||| |||| ||||||||  ||||||| ||| |||||||||||  |||||||||||||||| ||| ||||||    
T  3619026 ttttcctcatcataaaaaagttaagttttaactattagattaaataggatacacaattttatcatgatctctcaaca 3619102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 31910554 - 31910651
Alignment:
Q  198 ggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    ||||||||||||||| ||||||||||    |||| |||||| | ||||||||||||||||||||  |||||| |||     |||||||||||||||||    
T  31910554 ggtgtcatttaatttaggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattaaattaaagaggagtatcaattttatcatggtct 31910651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 54007629 - 54007673
Alignment:
Q  251 aaccatttgattaaatagggaacacaattttatcatggtctttca 295  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||    
T  54007629 aaccattagattaaataaggaacacaattttatcatagtctttca 54007673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 47523270 - 47523315
Alignment:
Q  246 tttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    ||||| |||||| ||||||||| |||||||||||||||||| ||||    
T  47523270 tttttgaccattagattaaataaggaacacaattttatcatagtct 47523315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 54007593 - 54007549
Alignment:
Q  251 aaccatttgattaaatagggaacacaattttatcatggtctttca 295  Q
    |||||||  |||||||| |||||||||||||||||| ||||||||    
T  54007593 aaccattatattaaataaggaacacaattttatcatagtctttca 54007549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 198 - 337
Target Start/End: Complemental strand, 41224891 - 41224748
Alignment:
Q  198 ggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 293  Q
    |||| |||||||||||||||||||||    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41224891 ggtgccatttaatttgggaaaggcttattttttcccaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 41224792  T
Q  294 caacacactannnnnnncttcatcatcttccaccaccatccttc 337  Q
    ||||||||||       |||||||||||||||||||||||||||    
T  41224791 caacacactatttttttcttcatcatcttccaccaccatccttc 41224748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 198 - 337
Target Start/End: Original strand, 29314581 - 29314724
Alignment:
Q  198 ggtgtcatttaatttgggaaaggctttttct----caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 293  Q
    |||| ||||||||||| ||||||||| || |    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29314581 ggtgccatttaatttgagaaaggcttgtttttttccaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 29314680  T
Q  294 caacacactannnnnnncttcatcatcttccaccaccatccttc 337  Q
    ||||||||||       |||||||||||||||||||||||||||    
T  29314681 caacacactatttttttcttcatcatcttccaccaccatccttc 29314724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 44896081 - 44896150
Alignment:
Q  229 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 298  Q
    |||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  44896081 caccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 44896150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 29007247 - 29007176
Alignment:
Q  198 ggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaa 265  Q
    ||||||||||||||||||||||||||    |||| |||||| | |||||||||||||||||||| |||||||    
T  29007247 ggtgtcatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaa 29007176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 29006347 - 29006444
Alignment:
Q  198 ggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagg-gaacacaattttatcatggtct 291  Q
    |||| |||||||||||||||||||||    |||| |||||| | |||||||||||||||||||| ||||||| ||| | || |||||||||||||||||    
T  29006347 ggtgccatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtac-caattttatcatggtct 29006444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 33687754 - 33687693
Alignment:
Q  238 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    ||||||||||||||||||||  ||||| ||||||||| ||| |||||||||||| |||||||    
T  33687754 aaagttagtttttaaccattgaattaagtagggaacataatgttatcatggtctctcaacac 33687693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 32904607 - 32904571
Alignment:
Q  335 ttcacccgtttttcctcttctcatttcttcaactaag 371  Q
    |||||| ||||||||||||||||||||||||||||||    
T  32904607 ttcaccagtttttcctcttctcatttcttcaactaag 32904571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 45065372 - 45065267
Alignment:
Q  269 ggaacacaattttatcatggtctttcaacacactannnnnnncttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaact 368  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  45065372 ggaacacaattttatcatggtctttcaacacactatttttttcttcatcatcttccaccatcatcctttacccgtttttcctcttctcatttcttcaact 45065273  T
Q  369 aagatc 374  Q
    ||||||    
T  45065272 aagatc 45065267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 32538523 - 32538446
Alignment:
Q  222 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    |||||| |||||| ||||||||||||||||||||||  ||||| ||||||||| ||| |||||||||||| |||||||    
T  32538523 tttttcccaccatggaaaagttagtttttaaccattgaattaagtagggaacataatgttatcatggtctctcaacac 32538446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 49611613 - 49611503
Alignment:
Q  193 aagatggtgtcatttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatgg 288  Q
    ||||| ||| ||||||||||||||||||||    ||||| || ||| | ||| |||||||||  ||||| |||||||||||||||||||||||| |||||    
T  49611613 aagatagtgccatttaatttgggaaaggctagttttttcccatcatgggaaaattagtttttggccattagattaaatagggaacacaattttaccatgg 49611514  T
Q  289 tctttcaacac 299  Q
    ||| |||||||    
T  49611513 tctctcaacac 49611503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 1034721 - 1034825
Alignment:
Q  198 ggtgtcatttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 293  Q
    |||||| |||||||||||||||| |    ||| | |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |    
T  1034721 ggtgtcgtttaatttgggaaaggttagtttttccccaccataggaaagttagtttttaaccattagattaaatagggtacacaattttatcatgatctct 1034820  T
Q  294 caaca 298  Q
    |||||    
T  1034821 caaca 1034825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 10608361 - 10608271
Alignment:
Q  205 tttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 291  Q
    ||||||||||||||||||    ||||| |||||| | ||||||||||||| |||||| |||||||||||||||||||| |||| |||||||    
T  10608361 tttaatttgggaaaggctggttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtct 10608271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 930966 - 931029
Alignment:
Q  236 gaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||| ||||||| |||||||    
T  930966 gaaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcaacac 931029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 28534793 - 28534870
Alignment:
Q  222 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    ||||||||||||| | || ||||||||||||| ||| |||||||||||||||| ||||||| ||| |||| |||||||    
T  28534793 tttttctcaccatgggaaggttagtttttaactattggattaaatagggaacaaaattttaccatagtctctcaacac 28534870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 18605036 - 18605106
Alignment:
Q  229 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    |||||| | ||||||| ||||||||||||  ||||| ||||||||| |||||||||||||||| |||||||    
T  18605036 caccatgggaaagttaatttttaaccattgaattaagtagggaacataattttatcatggtctctcaacac 18605106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 38741263 - 38741368
Alignment:
Q  198 ggtgtcatttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 293  Q
    |||| ||||||||||||||| ||||    |||||||| || || |||||||||||||  ||||| |||||||||||||||||||||||| |||||||| |    
T  38741263 ggtgccatttaatttgggaatggctagttttttctcatcaaaggaaagttagtttttggccattagattaaatagggaacacaattttaccatggtctct 38741362  T
Q  294 caacac 299  Q
    ||||||    
T  38741363 caacac 38741368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 46719661 - 46719765
Alignment:
Q  198 ggtgtcatttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 293  Q
    |||| |||||||||||||||| |||    |||||||| ||| | |||||||||||||  ||||| |||||||||||||||||||||||| |||||||| |    
T  46719661 ggtgccatttaatttgggaaatgctagttttttctcatcatgggaaagttagtttttggccattagattaaatagggaacacaattttaccatggtctct 46719760  T
Q  294 caaca 298  Q
    |||||    
T  46719761 caaca 46719765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 26837210 - 26837140
Alignment:
Q  229 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    |||||| | ||| ||||||||||||||||  ||||| ||||||||| ||||||| |||||||| |||||||    
T  26837210 caccatgggaaaattagtttttaaccattgaattaagtagggaacaaaattttaccatggtctctcaacac 26837140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 37999508 - 37999569
Alignment:
Q  238 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    ||||||||||||||||||||  ||||| ||||||||| ||||||| |||| ||| |||||||    
T  37999508 aaagttagtttttaaccattgaattaagtagggaacaaaattttaccatgatctctcaacac 37999569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 46739661 - 46739721
Alignment:
Q  238 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    |||||||||||  |||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  46739661 aaagttagtttg-aaccatttaattaaatagggaacataatttcatcatggtctctcaacac 46739721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 23096 - 23035
Alignment:
Q  238 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    |||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  23096 aaagttagttttgaaccattagattaaatagggaacataattttatcatggtctctcaacac 23035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 42654870 - 42654940
Alignment:
Q  229 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    |||||| | |||||||||||||||||||| |||||| ||||||||| ||||||| |||||||| |||||||    
T  42654870 caccatgggaaagttagtttttaaccattggattaagtagggaacaaaattttaccatggtctctcaacac 42654940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 4821144 - 4821105
Alignment:
Q  335 ttcacccgtttttcctcttctcatttcttcaactaagatc 374  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  4821144 ttcacccgcttttcctcttctcatttcttcaactaagatc 4821105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 26316 - 26365
Alignment:
Q  248 tttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 299  Q
    |||||||||||||| |||| ||||||||||| ||||||||  ||||||||||    
T  26316 tttaaccatttgatcaaatggggaacacaatgttatcatg--ctttcaacac 26365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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