View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12743_low_3 (Length: 287)
Name: NF12743_low_3
Description: NF12743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12743_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 25711442 - 25711705
Alignment:
| Q |
14 |
gtttcttcattaataaattcttttctttgagacatttcatcaagcacttggtgcaactctttgaaacacttcattttaccgagaatgttgataatctcgt |
113 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25711442 |
gtttcttcattaataaattcttttctttgcgacatttcatcaagcacttggtgtaactcttcgaaacacttcattttaccgagaatgttgataatctcgt |
25711541 |
T |
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| Q |
114 |
tgtacacttcgcaactgggtgtgtagttgttggttttggagacccatttgaagaatataaacgctggtttccaatcagaacgatgccgttgcaaaacttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25711542 |
tgtacacttcgcaactgggtgtgtagttgttggttttggagacccatttgaagaatataaacgctggtttccaatcggaacgatgccgttgcaaaacttg |
25711641 |
T |
|
| Q |
214 |
gaggacaaggttgttgtcggggtgaattccagtgaggttaagagctcgttcgatttgttctgtg |
277 |
Q |
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| T |
25711642 |
gaggacaaggttgttgttggggtgaattccaatgaggttaagagcttgttcgatttgttctgtg |
25711705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 32882861 - 32882598
Alignment:
| Q |
14 |
gtttcttcattaataaattcttttctttgagacatttcatcaagcacttggtgcaactctttgaaacacttcattttaccgagaatgttgataatctcgt |
113 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
32882861 |
gtttcttcattaataaattcttttctttgcgacatttcatcaagcacttggtgtaactcttcgaaacacttcattttactgagaatgttgataatctcgt |
32882762 |
T |
|
| Q |
114 |
tgtacacttcgcaactgggtgtgtagttgttggttttggagacccatttgaagaatataaacgctggtttccaatcagaacgatgccgttgcaaaacttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
32882761 |
tgtacacttcgcaactgggtgtgtagttgttggttttggagacccatttgaagaatataaacgctggtttccaatcggaacgatgccgttgtaaaacttt |
32882662 |
T |
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| Q |
214 |
gaggacaaggttgttgtcggggtgaattccagtgaggttaagagctcgttcgatttgttctgtg |
277 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32882661 |
gaggacaaggttgttgttggggtgaattccagtgaggttaagagctcgttcgatttgttctgtg |
32882598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 28087227 - 28087490
Alignment:
| Q |
14 |
gtttcttcattaataaattcttttctttgagacatttcatcaagcacttggtgcaactctttgaaacacttcattttaccgagaatgttgataatctcgt |
113 |
Q |
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||||||||||| ||||||| ||||||||| |||||||| || ||||||||||| ||||||| |||| |||||||||||| |||||||| |||||||| | |
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| T |
28087227 |
gtttcttcattgataaattattttctttgtgacatttcgtcgagcacttggtgtaactcttcaaaacgcttcattttaccaagaatgttaataatctcat |
28087326 |
T |
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| Q |
114 |
tgtacacttcgcaactgggtgtgtagttgttggttttggagacccatttgaagaatataaacgctggtttccaatcagaacgatgccgttgcaaaacttc |
213 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |
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| T |
28087327 |
tgtacacttcacaactgggtgtgtagttgttggttttggtgacccatttgaagaatataaacgctggtttccaatcggaccgatgccgttgcaaaagttc |
28087426 |
T |
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| Q |
214 |
gaggacaaggttgttgtcggggtgaattccagtgaggttaagagctcgttcgatttgttctgtg |
277 |
Q |
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|||||| |||||| ||||||| || ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
28087427 |
gaggacgaggttgctgtcgggatggattccggtgagattaagagctcgttcgatttgttctgtg |
28087490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 35480307 - 35480557
Alignment:
| Q |
14 |
gtttcttcattaataaattcttttctttgagacatttcatcaagcacttggtgcaactctttgaaacacttcattttaccgagaatgttgataatctcgt |
113 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||| || ||||||||||| ||||||| ||| |||||||||||| | ||| || |||||||| |
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| T |
35480307 |
gtttcttcattgataaattcttttctttgcgacatttcgtcgagcacttggtgtaactcttcaaaatgcttcattttaccaacaattttaataatctcag |
35480406 |
T |
|
| Q |
114 |
tgtacacttcgcaactgggtgtgtagttgttggttttggagacccatttgaagaatataaacgctggtttccaatcagaacgatgccgttgcaaaacttc |
213 |
Q |
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||||||||||||||| ||||||||||||||| ||||||| ||||| ||| |||||||||||||||||||| |||| || ||||| |||||||||||||| |
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| T |
35480407 |
tgtacacttcgcaacggggtgtgtagttgtttgttttggtgacccttttcaagaatataaacgctggttttcaattggatcgatgtcgttgcaaaacttc |
35480506 |
T |
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| Q |
214 |
gaggacaaggttgttgtcggggtgaattccagtgaggttaagagctcgttc |
264 |
Q |
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|||||| |||||| |||||||||| ||||||||||| |||| ||||||||| |
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| T |
35480507 |
gaggacgaggttgctgtcggggtggattccagtgagattaaaagctcgttc |
35480557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 22341540 - 22341444
Alignment:
| Q |
14 |
gtttcttcattaataaattcttttctttgagacatttcatcaagcacttggtgcaactctttgaaacacttcattttaccgagaatgttgataatct |
110 |
Q |
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||||||||||| ||||||||||||||||| |||||||| || ||||||||||| |||| || |||| |||||||||||| |||||||| ||||||| |
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| T |
22341540 |
gtttcttcattgataaattcttttctttgcgacatttcgtcgagcacttggtgtaactattcaaaacgcttcattttaccaagaatgttaataatct |
22341444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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